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Protein Overview: prp28

General Information:
Name(s) found: prp28 / SPCC63.11 [Sanger Pombe]
Description(s) found:
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  • pir||T41512 u5 snrnp-like RNA helicase subunit - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74654533|sp|Q9Y7T7.1|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28 [NCBI NR]
  • gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • U5 snRNP-associated protein Prp28 [Sanger Pombe]
  • Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE PRE-MRNA SPLICING FACTOR; U5 SNRNP-LIKE RNA HELICASE SUBUNIT; SIMILAR TO S. CEREVISIAE PRP28: Q9Y7T7; [pompepVF.fasta]
  • U5 snRNP-like RNA helicase subunit [pompep4896]
  • |prp28||putative pre-mRNA splicing factor [pompepnew.fasta]
  • Prp28 protein (Spcc63.11 protein) [4896.FASTAC]
  • |prp28||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • u5 snrnp-like RNA helicase subunit [Schizosaccharomyces pombe]gi|4539604|emb|CAB40015.1| SPCC63.11 [Schizosaccharomyces pombe]gi|7493547|pir||T41512 u5 snrnp-like RNA helicase subunit - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (Q9Y7T7) U5 snRNP-like RNA helicase subunit [pompep4896_normal_reversed]
  • |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC63.11 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC63.11 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Pre-mRNA-splicing ATP-dependent RNA helicase prp28 [nr-271106-contam.fasta]
  • Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp28 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 662 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spliceosomal complex [ISSLink to PubMed article]
    Biological Process: RNA splicing, via transesterification reactions [ISSLink to PubMed article]
    cis assembly of pre-catalytic spliceosome [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    ATP-dependent RNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQDSIPSL EQLVQQKRVK EEKAARPKFL SKAERARLAL ERRQKEVEEA KAKQNDKLLD  60
   61 LRKRTFTNHL ENNELADDEK KSQVSSVSSN NSGTESSATD EAFSMTIRQR YMGIKPPVVK 120
  121 KRRRNADKKF VFDWDATDDT MKDAETSASP EATIAVFGRG KLGGFDDQSI RKAKSNSGLI 180
  181 QRLLQGTEQD KARAHELIQL QEKRAKKIDW DDVPWREKPL EAMKPRDWRI LKEDYNISIK 240
  241 GDDLPNPLRN WEEAGLPSEM LKVLKKVNYK EPSSIQRAAI PVLLQRKDLI GIAETGSGKT 300
  301 AAFIIPLIIA ISKLPPLTES NMHLGPYAVV LAPTRELAQQ IQVEGNKFAE PLGFRCVSVV 360
  361 GGHAFEEQSF QMSQGAHIVV ATPGRLLDCL ERRLFVLSQC TYVVMDEADR MLDMGFEDDV 420
  421 NKILSSLPSS NASEKDGSIL ATANSSSSRR QTIMFSATLP PRVANLAKSY LIEPVMLTIG 480
  481 NIGQAVDRVE QRVEMISDDS KKWRRVEEIL ESNRFSPPII IFVNLKRNIE AIAKQLNAIG 540
  541 WHAVTLHGSK SQEQRERAIE QLRNKTADIL VATDIAGRGI DIPNVSLVLN YNMAKSIEDY 600
  601 THRIGRTGRA GKSGTAITFL GPEDTDVYYD LRVLLSRSAK AHIPDELRNH EAAFVRHAAI 660
  661 TQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] MSA 1.553995 View MSA. No confident structure predictions are available.
    2 View Details [203..662] PSI-BLAST 91.69897 No description for 2db3A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle