YRC Public Data Repository - Protein Structure Prediction

Protein:	prp28
Organism:	Schizosaccharomyces pombe
Length:	662 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp28.

Description	E-value	Query Range	Subject Range
gi\|108882993, gi... - gi\|157121045\|ref\|XP_001653747.1\| DEAD box ATP-dependent RNA helicase [Aedes aegypti], gi\|108882993\|g...	376.0	[0..7]	[660..119]
gi\|74006744 - gi\|74006744\|ref\|XP_861568.1\| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like ...	376.0	[0..98]	[652..22]
gi\|109130455 - gi\|109130455\|ref\|XP_001095294.1\| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Macaca m...	375.0	[0..22]	[652..191]
gi\|159125162 - gi\|159125162\|gb\|EDP50279.1\| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163] PRP28_ASPFU - Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1 PRP28_ASPFU - Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fumigata (strain ATCC MYA-4609 / A...	375.0	[0..7]	[654..78]
PRP28_ASPTN - Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1...	374.0	[0..7]	[656..70]
PRP28_COCIM - Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1 PRP28_COCIM - Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis (strain RS) GN=PRP28 PE=3...	370.0	[0..7]	[654..87]
gi\|109510438, gi... - gi\|109511507\|ref\|XP_001060162.1\| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box pr...	370.0	[0..98]	[652..22]
DDX3X_MOUSE - ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3	370.0	[0..98]	[652..22]
tr\|G3GSH5\|G3GSH5... - ATP-dependent RNA helicase DDX3X OS=Cricetulus griseus GN=I79_000589 PE=3 SV=1 gi\|20373098 - gi\|20373098\|dbj\|BAB91216.1\| RNA helicase [Mesocricetus auratus]	370.0	[0..98]	[652..22]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQDSIPSL EQLVQQKRVK EEKAARPKFL SKAERARLAL ERRQKEVEEA KAKQNDKLLD  60
   61 LRKRTFTNHL ENNELADDEK KSQVSSVSSN NSGTESSATD EAFSMTIRQR YMGIKPPVVK 120
  121 KRRRNADKKF VFDWDATDDT MKDAETSASP EATIAVFGRG KLGGFDDQSI RKAKSNSGLI 180
  181 QRLLQGTEQD KARAHELIQL QE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [203-662]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRAKKIDWDD VPWREKPLEA MKPRDWRILK EDYNISIKGD DLPNPLRNWE EAGLPSEMLK  60
   61 VLKKVNYKEP SSIQRAAIPV LLQRKDLIGI AETGSGKTAA FIIPLIIAIS KLPPLTESNM 120
  121 HLGPYAVVLA PTRELAQQIQ VEGNKFAEPL GFRCVSVVGG HAFEEQSFQM SQGAHIVVAT 180
  181 PGRLLDCLER RLFVLSQCTY VVMDEADRML DMGFEDDVNK ILSSLPSSNA SEKDGSILAT 240
  241 ANSSSSRRQT IMFSATLPPR VANLAKSYLI EPVMLTIGNI GQAVDRVEQR VEMISDDSKK 300
  301 WRRVEEILES NRFSPPIIIF VNLKRNIEAI AKQLNAIGWH AVTLHGSKSQ EQRERAIEQL 360
  361 RNKTADILVA TDIAGRGIDI PNVSLVLNYN MAKSIEDYTH RIGRTGRAGK SGTAITFLGP 420
  421 EDTDVYYDLR VLLSRSAKAH IPDELRNHEA AFVRHAAITQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.69897
Match:	2db3A
Description:	No description for 2db3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits