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Protein Overview: msw1

General Information:
Name(s) found: msw1 / SPAC3G9.13c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • mitochondrial tryptophan-tRNA ligase Msw1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 361 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: mitochondrial translation [RCALink to PubMed article]
    tryptophanyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    protein homodimerization activity [NASLink to PubMed article]
    tryptophan-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLPKITSL LPHSRVVSGI QPTGIPHIGN YLGSLKQWVQ LQEEAARTPF SKCFFFVADL  60
   61 HALTVPQDPL KFRQARLDML AALLAIGINP QKSTLFFQSD VAQHSELAWL LACSTSMGQL 120
  121 NRMTQWKSKL HLHDHDDLSF LDASATSSTR FNLGLFSYPV LQAADILLYG ATHIPVGKDQ 180
  181 SQHVELTRSI ARSFNSSYKE KILTVPDIIL NSSSSIMALC QPEKKMSKSD INSKNYILLS 240
  241 DSTGEIRKKI SRAQTDNIKG ITYGDSNRPG INNLINIFAA ISDSTPSDIA QANASCSNAE 300
  301 FKEKVSSAII RCLQPISTSF NEWRQNRELL RDIAKKGAEE AVAEASSCMH KLKTLTGLSV 360
  361 Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..361] PSI-BLAST 97.69897 Tryptophanyl-tRNA synthetase (TrpRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  5.34430928486195 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.50161401062914 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • binding
    		•  0.535704308663141 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.449504767632354 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.126511747475258 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle