Protein Overview: seb1

General Information:
Name(s) found:	seb1 / SPAC222.09 [Sanger Pombe]
Description(s) found: Found 19 descriptions. SHOW ALL	RNA-binding protein Seb1 [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	620 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA][ISS]
Biological Process:	termination of RNA polymerase II transcription, poly(A)-independent [ISS] RNA 3'-end processing [ISS]
Molecular Function:	RNA binding [ISS] protein binding [IPI]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIAEFDGI LDSLEHSKTG ISGSKILKLT NLSMENVSEN AQFVASVYKY AKRAPVTHKL  60
   61 GALYILDSIV RSFQDGAKKN NESFENPVDA SFSGGWCKAA EITDSLVADA IQHAPSAHLP 120
  121 KILKLCDIWE KASTFPPEKL ESLRSKLKDA MASTEPVSVD SAAAPSQSTN PEGNGGSVGS 180
  181 QAAAPTSRPV ENDAASILEA LAAFAQKAPV PSAAEESVST PPQPAVAPSV SAVVPNLPVH 240
  241 PATAINAQSQ SGNPLSNPLF QPSNVPQSIP SGPMGMKTGS VNDTQSQQIT LMNVLASQNV 300
  301 PPAQIDSIMK AAFPNYNAPF QPAGVGSVPL PAPTSSQSLR LGSLHRSRSP SPRSGRPRRS 360
  361 PSPSHLSIPS TLPPADGVPK PTPDGFPRRF ERDPTIPPDS IKVYSRTLFL GGITRSVREP 420
  421 VLRSMFERFG SVQSLILNHN YRHGFLKMFR RDAAEKAQVA MENVPFADTT IRTKWGVGFG 480
  481 PRECSDFSTG ISVIPIRLLT DADRTWLVTA EYGGTGGLPI TPGIALDEPD IEIGLGISSK 540
  541 AISKRGKDFA MRRDERFRGR KPYRGGPPIH HGERHFDSGN DWHGNPSTVP PPTNPYNPGY 600
  601 PYMDPNYSSG YVSQPPWQPQ

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..207]	PSI-BLAST	35.154902	No description for 2diwA was found.
2	View Details	[208..272]	deduced	N/A	No confident structure predictions are available.
3	View Details	[273..398]	PSI-BLAST	25.0	Poly(A)-binding protein
4	View Details	[399..620]	PSI-BLAST	30.0	Sex-lethal protein

Functions predicted (by domain):

#

Gene Ontology predictions

1

No functions predicted.

2

No functions predicted.

3

Term	Confidence	Notes
nucleic acid binding	4.50398990564944	bayes_pls_golite062009
RNA binding	4.46119712758726	bayes_pls_golite062009
binding	4.16717332578111	bayes_pls_golite062009
mRNA binding	3.05425904007847	bayes_pls_golite062009
transcription regulator activity	2.18211199677674	bayes_pls_golite062009
DNA binding	1.73925834998328	bayes_pls_golite062009
	1.52879236550095	bayes_pls_golite062009
protein binding	1.32954276279597	bayes_pls_golite062009
transcription factor activity	0.873765500321315	bayes_pls_golite062009
single-stranded RNA binding	0.852368751354665	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.632534695085793	bayes_pls_golite062009
poly-pyrimidine tract binding	0.56829350502235	bayes_pls_golite062009
sequence-specific DNA binding	0.294937517750882	bayes_pls_golite062009

4

Term	Confidence	Notes
nucleic acid binding	4.50398990564944	bayes_pls_golite062009
RNA binding	4.46119712758726	bayes_pls_golite062009
binding	4.16717332578111	bayes_pls_golite062009
mRNA binding	3.05425904007847	bayes_pls_golite062009
transcription regulator activity	2.18211199677674	bayes_pls_golite062009
DNA binding	1.73925834998328	bayes_pls_golite062009
	1.52879236550095	bayes_pls_golite062009
protein binding	1.32954276279597	bayes_pls_golite062009
transcription factor activity	0.873765500321315	bayes_pls_golite062009
single-stranded RNA binding	0.852368751354665	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.632534695085793	bayes_pls_golite062009
poly-pyrimidine tract binding	0.56829350502235	bayes_pls_golite062009
sequence-specific DNA binding	0.294937517750882	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle