| Protein: | seb1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 620 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for seb1.
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..216] | [619..1] |
|
|
190.0 | [0..216] | [617..1] |
|
|
189.0 | [0..2] | [608..3] |
|
Region A: Residues: [1-207] |
1 11 21 31 41 51
| | | | | |
1 MSGIAEFDGI LDSLEHSKTG ISGSKILKLT NLSMENVSEN AQFVASVYKY AKRAPVTHKL 60
61 GALYILDSIV RSFQDGAKKN NESFENPVDA SFSGGWCKAA EITDSLVADA IQHAPSAHLP 120
121 KILKLCDIWE KASTFPPEKL ESLRSKLKDA MASTEPVSVD SAAAPSQSTN PEGNGGSVGS 180
181 QAAAPTSRPV ENDAASILEA LAAFAQK
|
| Detection Method: |  |
| Confidence: | 35.154902 |
| Match: | 2diwA |
| Description: | No description for 2diwA was found. |
|
Region A: Residues: [208-272] |
1 11 21 31 41 51
| | | | | |
1 APVPSAAEES VSTPPQPAVA PSVSAVVPNL PVHPATAINA QSQSGNPLSN PLFQPSNVPQ 60
61 SIPSG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [273-398] |
1 11 21 31 41 51
| | | | | |
1 PMGMKTGSVN DTQSQQITLM NVLASQNVPP AQIDSIMKAA FPNYNAPFQP AGVGSVPLPA 60
61 PTSSQSLRLG SLHRSRSPSP RSGRPRRSPS PSHLSIPSTL PPADGVPKPT PDGFPRRFER 120
121 DPTIPP
|
| Detection Method: | |
| Confidence: | 25.0 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.50398990564944 | bayes_pls_golite062009 |
| RNA binding | 4.46119712758726 | bayes_pls_golite062009 |
| binding | 4.16717332578111 | bayes_pls_golite062009 |
| mRNA binding | 3.05425904007847 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.73925834998328 | bayes_pls_golite062009 |
| 1.52879236550095 | bayes_pls_golite062009 | |
| protein binding | 1.32954276279597 | bayes_pls_golite062009 |
| transcription factor activity | 0.873765500321315 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.852368751354665 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.632534695085793 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.56829350502235 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.294937517750882 | bayes_pls_golite062009 |
|
Region A: Residues: [399-620] |
1 11 21 31 41 51
| | | | | |
1 DSIKVYSRTL FLGGITRSVR EPVLRSMFER FGSVQSLILN HNYRHGFLKM FRRDAAEKAQ 60
61 VAMENVPFAD TTIRTKWGVG FGPRECSDFS TGISVIPIRL LTDADRTWLV TAEYGGTGGL 120
121 PITPGIALDE PDIEIGLGIS SKAISKRGKD FAMRRDERFR GRKPYRGGPP IHHGERHFDS 180
181 GNDWHGNPST VPPPTNPYNP GYPYMDPNYS SGYVSQPPWQ PQ
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 3sxlA |
| Description: | Sex-lethal protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.50398990564944 | bayes_pls_golite062009 |
| RNA binding | 4.46119712758726 | bayes_pls_golite062009 |
| binding | 4.16717332578111 | bayes_pls_golite062009 |
| mRNA binding | 3.05425904007847 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.73925834998328 | bayes_pls_golite062009 |
| 1.52879236550095 | bayes_pls_golite062009 | |
| protein binding | 1.32954276279597 | bayes_pls_golite062009 |
| transcription factor activity | 0.873765500321315 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.852368751354665 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.632534695085793 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.56829350502235 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.294937517750882 | bayes_pls_golite062009 |
