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Protein Overview: SPBC29A10.07

General Information:
Name(s) found: SPBC29A10.07 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • nucleoporin Pom152 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1250 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nuclear pore [ISSLink to PubMed article]
    Biological Process: nucleocytoplasmic transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTRVASSER PRPLVPESIV DAPTQRLYAI GVFVALQAYK IYDLLKLETS SISDVPKSGF  60
   61 LVKWIIIDAI YLRLLPKFRI PWLSFQPAAT LLQIAIFAAI NLLLSSLSSL KWISIGSILL 120
  121 PYFKKKELSI SEHKINPNNV IHNSSRILGQ YTLQVLPEGT AKINPLHENY CLNSLRKDQY 180
  181 VDLAIQFNST IPKYIQYSHV DLETKEETLV EVSGRSLRKL LSSSSKNPKE PRLQTIYLKT 240
  241 NKRGLYTLKH VVDKSKLDVR IFRSEAVVVS CPTATFASRQ SGGRLRERCV GDTDNAELKV 300
  301 TGVAPLQVTY RNWDGKHFNT HIIDSTIPDD FHPPAVVLSS NPKDIVFYKG IDIQWARSSE 360
  361 IFVPINTLLK APGQWIYAVT QVTDALGNSQ QFPSNDQFLL RFAHGYTEAD GESHSLPENV 420
  421 YSVFVHQRPD IQFRGCSIES PANLFPNKET SLSLYSSFSE YNSLEVGVDR YELGLDPQNI 480
  481 TVPPLSHKTY QISPRSSANI NVKKPGIYVL SSVSSQYCSG EVLEPNTCLV VTPPEAKVSV 540
  541 SFEEISDQCA GSIGARADLE LEGTPPFTIA YRMTKDNEAS RIQYVTTDRT RYQLNFTPKK 600
  601 AGKYRYIILG IQDANYGYRE LSGSSFYKDQ TVFPLADASF EERRNGDLST VVKTSCIGDT 660
  661 MSLPVLLTGS APWTLEYEIF RNNKREESHV VESKDPRYIL EVPMLVHGSQ YTITLVSVKD 720
  721 SNGCKRSLNT ADTVIKVRRQ RPTATFYSSD NTYTLKSVEG ALMKIPLRLA GEKPWYVEYS 780
  781 HTSGLNKVSH HKEVLNDPNS YLTVRKSGTY TLLSVSDSSC PGTIQNVEQK YQVEWLPRPF 840
  841 LSIPSLESSV KGKTRYYEQN AVCAGDSSAF EVQLSGSGPF LLKHDKILVD EKSKTYPKQK 900
  901 SELSTVQNTV LVKADTAVPG VYHYEFTKLS DSLYSDSDAV TIVNNQSYQA VVLQRVNSLP 960
  961 KASFMNVEKL YTFCINTDVT QSNAQLIAIQ LQGASPFSLV IGIKNELTGS VSKYTLNDIH1020
 1021 ESVYKFAFPQ EQLTLGKHVV RLLQVRDANG CAASITKTQP AAKVSVVEMA SLAPLGSRQY1080
 1081 YCVGDRLSFA LQGLPPFDVE YEFNGVTQHA TSDSHILTRL IELPGVVAMK SISDHGSHCK1140
 1141 SYINPPIEQI VHDIPTVRIS NGKDVIENIH EGDQAEISFH FTGTPPFSFS YARRALGKKR1200
 1201 PGKVLETHTV TGINEYEYKV LSSVEGVYTV LSVQDKYCRY PQDSTSSSNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..228] deduced N/A No confident structure predictions are available.
    2 View Details [229..325] deduced N/A No confident structure predictions are available.
    3 View Details [326..434] deduced N/A No confident structure predictions are available.
    4 View Details [435..1145] FFAS03 5.84 Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
    5 View Details [1146..1250] FFAS03 3.98 Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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