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Protein Overview: edc3

General Information:
Name(s) found: edc3 / SPBC18E5.11c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • enhancer of mRNA decapping Edc3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 454 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytoplasmic mRNA processing body [ISSLink to PubMed article]
    Biological Process: deadenylation-independent decapping of nuclear-transcribed mRNA [ISSLink to PubMed article]
    mRNA processing [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVADFYGSN VEVLLNNDSK ARGVITNFDS SNSILQLRLA NDSTKSIVTK DIKDLRILPK  60
   61 NEIMPKNGTK SPSTNSTKLK SAETYSSKNK WSMDCDEEFD FAANLEKFDK KQVFAEFREK 120
  121 DKKDPAKLLV SHNKSPNRNY HHKQNVLGPS VKDEFVDLPS AGSQINGIDA VLSSSSNGHV 180
  181 TPGSKKGSRE TLKKKPFVDE NIPAELHTTT GDILKPITPE QLSQGIALAI AKTSTDIVVE 240
  241 NAAQLLSQFV FSVLGGHKRL SSRNHNSQPL VCILVGSHDH ASAAVAAGRR LCAIGIKVVL 300
  301 RLLTPFNVDN RQLLMFQAAG GYIPTENFDQ FLNKLTSPIE LVVDVLTGFH PSIDKNSHAL 360
  361 IQWANDLNVL ILSVDIPSGY TVQKKNTAIL PKWTLALGAV TTTLAQAALV KQAAGVSVFV 420
  421 GNLGTGSQTW AELGILESQV TGQYLAQISC TSTN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] FFAS03 1.06 Sm-Like archaeal protein Smap3
    2 View Details [159..454] PSI-BLAST 62.39794 No description for 2dg2A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 6.31759698998802 bayes_pls_golite062009
  • RNA binding
    		•  5.49978007278445 bayes_pls_golite062009
  • mRNA binding
    		•  2.42306415646781 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.85673264747679 bayes_pls_golite062009
  • binding
    		•  1.34368822332546 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle