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Protein Overview: SPBC16G5.16

General Information:
Name(s) found: SPBC16G5.16 [Sanger Pombe]
Description(s) found:
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  • pir||T39608 zinc finger transcription factor - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74654670|sp|O60130.1|YH7G_SCHPO RecName: Full=Uncharacterized transcriptional regulatory protein C16G5.16 [NCBI NR]
  • gi|3133110|emb|CAA19035.1| transcription factor, zf-fungal binuclear cluster type (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113557|ref|NP_596765.1| transcription factor (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • transcription factor zf-fungal binuclear cluster type [Sanger Pombe]
  • Putative transcriptional regulatory protein C16G5.16 OS=Schizosaccharomyces pombe GN=SPBC16G5.16 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE TRANSCRIPTIONAL REGULATOR; ZINC FINGER PROTEIN; FUNGAL ZN(2)-CYS(6) BINUCLEAR CLUSTER DOMAIN: O60130; [pompepVF.fasta]
  • FUNGAL ZN(2)-CYS(6) BINUCLEAR CLUSTER ZINC FINGER TRANSCRIPTION FACTOR: O60130; [pompepV13]
  • Fungal Zn(2)-Cys(6) binuclear cluster zinc finger transcription factor [pompep4896]
  • |||putative transcriptional regulator [pompepnew.fasta]
  • SPBC16G5.16 protein [4896.FASTAC]
  • |||transcriptional regulator (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • fungal Zn(2)-Cys(6) binuclear cluster zinc finger transcription factor [Schizosaccharomyces pombe]gi|3133110|emb|CAA19035.1| SPBC16G5.16 [Schizosaccharomyces pombe]gi|7493745|pir||T39608 zinc finger transcription factor - fission yeast (Schizosaccharom [nrdb_11152004_Chlamydomonas]
  • |||transcriptional regulator |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O60130) Fungal Zn(2)-Cys(6) binuclear cluster zinc finger transcription factor [pompep4896_normal_reversed]
  • |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC16G5.16 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC16G5.16 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Putative transcriptional regulatory protein C16G5.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.16 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 827 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGDVSRRQ RVSRACDECH RRKIKCDQRR PCSNCIAYNY ECTYGQPFKR LRHAPEKYIE  60
   61 FLELRLKYLR GLAEESDPNL KLPSFLAPPN DKDSPVNQSP WKRSDSSKRS SSQDEFESLF 120
  121 DRYGQLSLKD DGKADFRGSS SGFVFMKNIH QNIARNSTVP NPVQESNSSS SQPDPLSFPY 180
  181 LPPTPAEDEH KKPPLKIQLP PYEEALSIVS QFFMNDHFLV HIHHPASFFE KMHMYYKTGK 240
  241 TDNNFHFLLV ATLCLGYTYM PDESPSANYP YHEAYEYYYY IRSSFSWEDS YTIEVVQILL 300
  301 SVALFALFSS RLSQAYTFTN NALLCCHELG LHKDFSDVLT SHESRLSKRV FYSVYVLACY 360
  361 TSTIVGLPLS IEDVDIDQSL PNSFDFTLEN DQVPPRLIAS ECTSLEVFIQ HITLSRILSH 420
  421 FVRKVYPVKS PSDSHCKVSL PAVRDHEEKL TYWWKNLPSY LKMSEVPKFS PKWIQAIILE 480
  481 LKFRQIELIF YRPFIHSIST PIDNQNGSPM KPANFALKCA QSAERVVFLL QELAKSPNTP 540
  541 KLFFNLYSGY YALMTLTYCA TLTKDDANKS NNFITKARLG FHCLQMIYRE STYYSTIMEA 600
  601 IKNLLIAYDM NSSGTENLDA TPDVTGQLPN NFSQRTSNIP REFPQAQIFY SDAPYPGYYN 660
  661 PAQFQNAPTN FPMPTYGGRT QDQSYPRQNG YPSYSDGNVY PHDRVMINYG SSMPTANGFY 720
  721 VPNTYSPVPF PYNTSYPPYM SPTSNMPQAF QAYSQYPYQH PPFPLSEQML PLPTSGVMMA 780
  781 PGAAKSGMPY PFIQPPSMTN QVAYPTVRDG SNNSPDHPSS SNSKRTE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] PSI-BLAST 7.39794 PPR1
    2 View Details [104..216] deduced N/A No confident structure predictions are available.
    3 View Details [217..382] Pfam 24.853872 No description for PF04082.9 was found. Confident ab initio structure predictions are available.
    4 View Details [383..629] deduced N/A No confident structure predictions are available.
    5 View Details [630..827] MSA 12.818997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.03201524223606 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.87955444697212 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.86200506906385 bayes_pls_golite062009
  • transcription activator activity
    		•  0.915626626047549 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle