| Protein: | SPBC16G5.16 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 827 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.16.
| Description | E-value | Query Range |
Subject Range |
|
|
312.0 | [0..1] | [790..53] |
|
|
309.0 | [0..3] | [800..56] |
|
|
302.0 | [0..7] | [794..64] |
|
|
301.0 | [0..3] | [800..56] |
|
|
297.0 | [0..5] | [816..65] |
|
|
293.0 | [0..5] | [727..10] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MSSGDVSRRQ RVSRACDECH RRKIKCDQRR PCSNCIAYNY ECTYGQPFKR LRHAPEKYIE 60
61 FLELRLKYLR GLAEESDPNL KLPSFLAPPN DKDSPVNQSP WKR
|
| Detection Method: |  |
| Confidence: | 7.39794 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [104-216] |
1 11 21 31 41 51
| | | | | |
1 SDSSKRSSSQ DEFESLFDRY GQLSLKDDGK ADFRGSSSGF VFMKNIHQNI ARNSTVPNPV 60
61 QESNSSSSQP DPLSFPYLPP TPAEDEHKKP PLKIQLPPYE EALSIVSQFF MND
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [217-382] |
1 11 21 31 41 51
| | | | | |
1 HFLVHIHHPA SFFEKMHMYY KTGKTDNNFH FLLVATLCLG YTYMPDESPS ANYPYHEAYE 60
61 YYYYIRSSFS WEDSYTIEVV QILLSVALFA LFSSRLSQAY TFTNNALLCC HELGLHKDFS 120
121 DVLTSHESRL SKRVFYSVYV LACYTSTIVG LPLSIEDVDI DQSLPN
|
| Detection Method: | |
| Confidence: | 24.853872 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.588 | 0.885 | cytosol | a.1.1 | Globin-like |
|
Region A: Residues: [383-629] |
1 11 21 31 41 51
| | | | | |
1 SFDFTLENDQ VPPRLIASEC TSLEVFIQHI TLSRILSHFV RKVYPVKSPS DSHCKVSLPA 60
61 VRDHEEKLTY WWKNLPSYLK MSEVPKFSPK WIQAIILELK FRQIELIFYR PFIHSISTPI 120
121 DNQNGSPMKP ANFALKCAQS AERVVFLLQE LAKSPNTPKL FFNLYSGYYA LMTLTYCATL 180
181 TKDDANKSNN FITKARLGFH CLQMIYREST YYSTIMEAIK NLLIAYDMNS SGTENLDATP 240
241 DVTGQLP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [630-827] |
1 11 21 31 41 51
| | | | | |
1 NNFSQRTSNI PREFPQAQIF YSDAPYPGYY NPAQFQNAPT NFPMPTYGGR TQDQSYPRQN 60
61 GYPSYSDGNV YPHDRVMINY GSSMPTANGF YVPNTYSPVP FPYNTSYPPY MSPTSNMPQA 120
121 FQAYSQYPYQ HPPFPLSEQM LPLPTSGVMM APGAAKSGMP YPFIQPPSMT NQVAYPTVRD 180
181 GSNNSPDHPS SSNSKRTE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
