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Protein Overview: pob3

General Information:
Name(s) found: pob3 / SPBC609.05 [Sanger Pombe]
Description(s) found:
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  • pir||T40576 probable structure recognition/chromatin-associated HMG protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582917|sp|O94529.1|POB3_SCHPO RecName: Full=FACT complex subunit pob3; AltName: Full=Facilitates chromatin transcription complex subunit pob3 [NCBI NR]
  • gi|4160575|emb|CAA22834.1| FACT complex component Pob3 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113107|ref|NP_596315.1| FACT complex component Pob3 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • FACT complex component Pob3 [Sanger Pombe]
  • FACT complex subunit pob3 OS=Schizosaccharomyces pombe GN=pob3 PE=2 SV=1 [Swiss-Prot]
  • SIMILAR TO S. CEREVISIAE POB3 BINDS TO DNA POLYMERASE I; PUTATIVE STRUCTURE SPECIFIC RECOGNITION PROTEIN: O94529; [pompepVF.fasta]
  • SIMILAR TO S. CEREVISIAE POB3 PROTEIN THAT BINDS TO DNA POLYMERASE I; PUTATIVE STRUCTURE SPECIFIC RECOGNITION PROTEIN: O94529; [pompepV13]
  • Putative structure specific recognition protein [pompep4896]
  • |||similar to S. cerevisiae POB3 [pompepnew.fasta]
  • SPBC609.05 protein [4896.FASTAC]
  • |||FACT complex component|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • similar to yeast POB3 protein that binds to DNA polymerase I; putative structure specific recognition protein [Schizosaccharomyces pombe]gi|4160575|emb|CAA22834.1| SPBC609.05 [Schizosaccharomyces pombe]gi|7493006|pir||T40576 probable structure recogniti [nrdb_11152004_Chlamydomonas]
  • |||FACT complex component |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O94529) Putative structure specific recognition protein [pompep4896_normal_reversed]
  • |pob3||FACT complex component Pob3|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC609.05 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC609.05 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • FACT complex subunit pob3 (Facilitates chromatin transcription complex subunit pob3) [nr-271106-contam.fasta]
  • FACT complex subunit pob3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pob3 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 512 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    FACT complex [IDALink to PubMed article]
    nuclear chromatin [ISSLink to PubMed article]
    nuclear replication fork [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: DNA repair [IMPLink to PubMed article]
    chromatin silencing at centromere [IMPLink to PubMed article]
    transcription, DNA-dependent [IMPLink to PubMed article]
    DNA-dependent DNA replication [IMPLink to PubMed article]
    histone exchange [ICLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    chromatin silencing at silent mating-type cassette [IMPLink to PubMed article]
    nucleosome assembly [ISSLink to PubMed article]
    cellular protein localization [ISSLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKTVQYDN IYLNLSEKPG KLRIAPSGLG WKSPSLAEPF TLPISEIRRF CWSRFARGYE  60
   61 LKIILKSKDP VSLDGFSQED LDDLINVIKQ NFDMGIEQKE FSIKGWNWGE ANFLGSELVF 120
  121 DVNSRPAFEI PISAVTNTNL SGKNEVALEF STTDDKQIPS AQVDELVEMR LYVPGTTAKE 180
  181 DAADGEEVEQ NAANLFYESL KERADIGQAA GDAIVSFSEI LLLTPRGRYD IDMYETCMRL 240
  241 RGKTYDYKVE YSSINSLFLL PKPDEQHVVF VIGLEPPLRQ GQTRYPFLVT QFVRDEDMEV 300
  301 DLNIEETVLK EKYADKVKAS YDQPAFEVVS QIFRGLTGRK VTTPAEFLSH EGHAAVKCSY 360
  361 KANEGQLYCL DKSFLFIPKP TLLMNTSDIT RVTLSRVGMS VSAARTFDLT FTLRSGTSYQ 420
  421 FSNINRVEQS ALVAFLESKQ IKIHNDLADE TQQTLLTSAL DDEDEEGDEE MEEALSEDED 480
  481 FQAESESDVA EEYDENAESS DEEGASGAEG SE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] MSA 2.033976 View MSA. No confident structure predictions are available.
    2 View Details [179..512] PSI-BLAST 102.0 No description for 2gclA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle