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View Structure Prediction Details

Protein: pob3
Organism: Schizosaccharomyces pombe
Length: 512 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pob3.

Description E-value Query
Range
Subject
Range
gi|60552474 - gi|60552474|gb|AAH91486.1| SSRP1 protein [Homo sapiens]
679.0 [0..3] [500..2]
gi|116283314 - gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
679.0 [0..3] [500..2]
SSRP1_CHICK - FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
677.0 [0..3] [509..2]
gi|109106294 - gi|109106294|ref|XP_001103334.1| PREDICTED: similar to structure specific recognition protein 1 [Mac...
673.0 [0..3] [500..2]
gi|49250826 - gi|49250826|gb|AAH74541.1| Ssrp1 protein [Xenopus (Silurana) tropicalis]
671.0 [0..3] [500..2]
SSRP1_RAT - FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
669.0 [0..3] [500..2]
gi|73982283 - gi|73982283|ref|XP_859953.1| PREDICTED: similar to structure specific recognition protein 1 isoform ...
666.0 [0..3] [493..2]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKTVQYDN IYLNLSEKPG KLRIAPSGLG WKSPSLAEPF TLPISEIRRF CWSRFARGYE  60
   61 LKIILKSKDP VSLDGFSQED LDDLINVIKQ NFDMGIEQKE FSIKGWNWGE ANFLGSELVF 120
  121 DVNSRPAFEI PISAVTNTNL SGKNEVALEF STTDDKQIPS AQVDELVEMR LYVPGTTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEDAADGEEV EQNAANLFYE SLKERADIGQ AAGDAIVSFS EILLLTPRGR YDIDMYETCM  60
   61 RLRGKTYDYK VEYSSINSLF LLPKPDEQHV VFVIGLEPPL RQGQTRYPFL VTQFVRDEDM 120
  121 EVDLNIEETV LKEKYADKVK ASYDQPAFEV VSQIFRGLTG RKVTTPAEFL SHEGHAAVKC 180
  181 SYKANEGQLY CLDKSFLFIP KPTLLMNTSD ITRVTLSRVG MSVSAARTFD LTFTLRSGTS 240
  241 YQFSNINRVE QSALVAFLES KQIKIHNDLA DETQQTLLTS ALDDEDEEGD EEMEEALSED 300
  301 EDFQAESESD VAEEYDENAE SSDEEGASGA EGSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 2gclA
Description: No description for 2gclA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle