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Protein Overview: SPBC20F10.07

General Information:
Name(s) found: SPBC20F10.07 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • GRAM domain protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 764 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    membrane [ISSLink to PubMed article]
    integral to membrane [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEENGFAGF LNTAVNRLSG VLNDTAPTKS QSLKNGVNNE GNRGFSLFRN PRFMSDEKLS  60
   61 SEASSHSTLG QQQARDGRQS PSKEAPFGEG ELKLENFENQ ENEADEAENE ETSYSEQNHT 120
  121 ENTEEIAEES RPLERTHSGS NHHEASSTGH LNLPPLENTL SQGSAITAPS RKVSITSSNG 180
  181 VSARLSGYAF ANSKRNRDFH RIFKVLPPED HLIDDYGCAL QRDIFLHGRM YLSESHICFN 240
  241 SSIFGWVTNI VIPVTEIVSV EKKSTAVVFP NAIQITTLHA RYIFASFISR DTTYQLIIAI 300
  301 WKNTHPFLTT LANGHGVMDA SGNHHSGSSN QSINADSSAG SEGVDEGTST EANDESSEDD 360
  361 DEDNNTDEAN EDAQSNVSDE SPKGEGSSHS DNVVLSDGNS VKKMNEDGAD TSLLSVSEVT 420
  421 SHPPTEWTGS PLAHVLCSDV VNLSVSTVFN LLCGSDTTWI INFFKSEKLT EIKIGKWEKI 480
  481 DDKWNRKVQY IKPVAPPYRQ TSCYITDTIQ HLDINNYIEI LSTTSTPDVP SGTSFVVKTL 540
  541 YALSWAHSSK TKLNISYSVE WSKSSWLKGP IEKGAQEGQA SYVKDLLTAF ENYKVSPKGR 600
  601 RKKITKHTKK KNKHASETSV APEKVDNSSI EQSSSFLTKL YTFPFTIITW LMHPTHLLLV 660
  661 VMFSMLVLQW WYMQQILHAE LPSTSSRSDS SRDLDFDHIP MDDTAFKLWI TSRLDSVERD 720
  721 RDFVYENSDP NLEHGKIKIA TDYMERRLKK LKERLRKLEA SGYI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] FFAS03 1.45 THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
    2 View Details [186..262] Pfam 30.537602 No description for PF02893.11 was found. No confident structure predictions are available.
    3 View Details [263..382] MSA 1.215991 View MSA. No confident structure predictions are available.
    4 View Details [383..600] FFAS03 0.986 Plant pathogenesis-related protein PR10
    5 View Details [601..764] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.0122410645074446 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle