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Protein Overview: sec39

General Information:
Name(s) found: sec39 / SPAC7D4.11c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • secretory pathway protein Sec39 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 769 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [ISS]
    nucleus [IDALink to PubMed article]
    nuclear membrane [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    endoplasmic reticulum [ISSLink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: vesicle-mediated transport [ISSLink to PubMed article]
    retrograde vesicle-mediated transport, Golgi to ER [ISS]
    intracellular protein transport [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDKLESKW LFSLTESQKL YLLISLIINK KLPEAKFVYK LLDYTKGNWL SLLLRFLPET  60
   61 TDPECYIPYI DIDSHYGNIK ASVNDIEPIV LPDEELCQLR LTNMKLWNCK LPSLKDEAEF 120
  121 YSLFSKKIVE ETDLVDLAYQ LTKNSQAPAE IQQWNSGTFT VFHKLSQFAA VPINLEEMEA 180
  181 ATIRDVISLA FPVLDSKNCV FIMDEIITVF INNSSNDPNL ISENWDFVWK KLLQLVKTDG 240
  241 LAVVHTLVLN WNTIEPKLFL KLAKVALASC YISDDSSLYS VSLARDITEA IQNKLNFSDV 300
  301 NFGDLLKKPH DFSADGLLSL QNDLTTPSSL STSLLMEITK AIALLTQLKV PAPTFKTSVS 360
  361 ISCSNFDSQI KYLENVLLNA LGTIQSPDYK DWHDLYSYIE RFKQLSLFFL NISEDAISVV 420
  421 FLKQMLQEKS FLALKQMRNE IGLKDIEPKV LIDCLKTSFY ENFRAASNMN KNRGKLALAC 480
  481 KVLDVFVDCE PTIDLRRRLN SLVNACSLIQ PFKLILEPGK PLSPSLVEAN LNPDKLIKTI 540
  541 FSQNPSAYTL YDDILALDIE LHKAAGDFDY SQVFTELRRI TEHMITLTID VSLEKDDIEY 600
  601 AKQIVEDRLM TLAEASEDVK FFLYEIAYKI GKFPSNHPNA KVIRLDMLQI AIANAPRQKL 660
  661 DEVVSYWTDF QSNSKVLEEN LNTTDVEFHS SKKIKDYEDL EDANFDEEWS KAADLMSDDP 720
  721 ENQVLYEGNL NSSLSLNEDP SVSDENLTQK VTSKLTNGLG WVLGVPPRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] deduced N/A No confident structure predictions are available.
    2 View Details [298..383] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [384..543] deduced N/A No confident structure predictions are available.
    4 View Details [544..769] MSA 1.012959 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle