YRC Public Data Repository - Protein Structure Prediction

Protein:	sec39
Organism:	Schizosaccharomyces pombe
Length:	769 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec39.

Description	E-value	Query Range	Subject Range
gi\|38107001, gi\|... - gi\|39972415\|ref\|XP_367598.1\| hypothetical protein MG07509.4 [Magnaporthe grisea 70-15], gb\|EAA53232....	730.0	[0..50]	[672..42]
gi\|46110058, gi\|... - gi\|46110058\|ref\|XP_382087.1\| hypothetical protein FG01911.1 [Gibberella zeae PH-1], gi\|42545826\|gb\|E...	717.0	[0..50]	[672..45]
gi\|28922231, gi\|... - gi\|32412748\|ref\|XP_326854.1\| hypothetical protein ( hypothetical protein 15E6.130 [imported] - Neuro... gi\|85099079 - gi\|85099079\|ref\|XP_960713.1\| hypothetical protein NCU01361 [Neurospora crassa OR74A]	693.0	[0..58]	[672..51]
gi\|11359402, gi\|... - gi\|7635840\|emb\|CAB88644.1\| conserved hypothetical protein [Neurospora crassa], pir\|\|T48805 hypotheti...	687.0	[0..58]	[672..51]
gi\|67527880, gi\|... - gi\|67527880\|ref\|XP_661792.1\| hypothetical protein AN4188.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	654.0	[0..50]	[672..45]
gi\|70990964, gi\|... - gi\|70990964\|ref\|XP_750331.1\| protein transport protein Sec39 [Aspergillus fumigatus Af293], gi\|66847...	475.0	[0..50]	[767..45]
gi\|114194609, gi... - gi\|115389416\|ref\|XP_001212213.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	463.0	[0..51]	[677..46]
gi\|169764705 - gi\|169764705\|ref\|XP_001816824.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764678 - gi\|83764678\|dbj\|BAE54822.1\| unnamed protein product [Aspergillus oryzae]	446.0	[0..50]	[767..45]
gi\|46433760, gi\|... - gi\|68487512\|ref\|XP_712377.1\| hypothetical protein CaO19.13553 [Candida albicans SC5314], gi\|46433760... orf19.13553 - orf19.6134 CGDID:CAL0006007 Assembly 19, Contig19-20238 (28844, 26397) CDS, reverse complemented, tr...	385.0	[0..354]	[764..411]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDKLESKW LFSLTESQKL YLLISLIINK KLPEAKFVYK LLDYTKGNWL SLLLRFLPET  60
   61 TDPECYIPYI DIDSHYGNIK ASVNDIEPIV LPDEELCQLR LTNMKLWNCK LPSLKDEAEF 120
  121 YSLFSKKIVE ETDLVDLAYQ LTKNSQAPAE IQQWNSGTFT VFHKLSQFAA VPINLEEMEA 180
  181 ATIRDVISLA FPVLDSKNCV FIMDEIITVF INNSSNDPNL ISENWDFVWK KLLQLVKTDG 240
  241 LAVVHTLVLN WNTIEPKLFL KLAKVALASC YISDDSSLYS VSLARDITEA IQNKLNF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [298-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDVNFGDLLK KPHDFSADGL LSLQNDLTTP SSLSTSLLME ITKAIALLTQ LKVPAPTFKT  60
   61 SVSISCSNFD SQIKYLENVL LNALGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.814	a.46.1	Methionine synthase domain

Predicted Domain #3

Region A:
Residues: [384-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQSPDYKDWH DLYSYIERFK QLSLFFLNIS EDAISVVFLK QMLQEKSFLA LKQMRNEIGL  60
   61 KDIEPKVLID CLKTSFYENF RAASNMNKNR GKLALACKVL DVFVDCEPTI DLRRRLNSLV 120
  121 NACSLIQPFK LILEPGKPLS PSLVEANLNP DKLIKTIFSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [544-769]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPSAYTLYDD ILALDIELHK AAGDFDYSQV FTELRRITEH MITLTIDVSL EKDDIEYAKQ  60
   61 IVEDRLMTLA EASEDVKFFL YEIAYKIGKF PSNHPNAKVI RLDMLQIAIA NAPRQKLDEV 120
  121 VSYWTDFQSN SKVLEENLNT TDVEFHSSKK IKDYEDLEDA NFDEEWSKAA DLMSDDPENQ 180
  181 VLYEGNLNSS LSLNEDPSVS DENLTQKVTS KLTNGLGWVL GVPPRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits