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Protein Overview: sfh1

General Information:
Name(s) found: sfh1 / SPCC16A11.14 [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • RSC complex subunit Sfh1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 418 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article][IDALink to PubMed article]
    nuclear chromatin [IC]
    cytosol [IDALink to PubMed article]
    RSC complex [IDALink to PubMed article]
    Biological Process: ATP-dependent chromatin remodeling [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQACKTTYS SRLKTGNTCL IQKNVAVSTR SHSSYTGRNS LRNVPAVNYA AFEQGEDFET  60
   61 PVETPEKEEE KFETDDRGLA VGRPTGNNIY PRFATKTRHI YVTDEQLKCA AEERDVYIPI 120
  121 RLDIELPNNY RLKDTFLWNM NEQVMTPDVF AQILCADLDL STNVYGTQIS SSIRAQIEEY 180
  181 APVAEVPMPK GQEMLVVFNI QVQLAQLSYN DQVEWNLTSP LTPEEFSVLT CNDLGLSGES 240
  241 RPEIAYAIHE CLLKLKKNAC EGDLPDYDSD AVPGTKAGPR QDMDTLGALW QPVLETVSLE 300
  301 DAKKNENNRE NLVKQWRREA SKFGGFAADV SAERWRAAAL GNLSQSETAN LPSASVSDAQ 360
  361 TLLEQERPRW RCRWCNVLGT GTFCVRRGPE GNKSLCNACG VAYAKTGQLP YWRKSLYT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..261] MSA 3.049984 View MSA. No confident structure predictions are available.
    2 View Details [262..332] deduced N/A No confident structure predictions are available.
    3 View Details [333..418] PSI-BLAST 14.0 Erythroid transcription factor GATA-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  4.00967542385368 bayes_pls_golite062009
  • binding
    		•  3.48726415487797 bayes_pls_golite062009
  • DNA binding
    		•  3.36252792779457 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.05528938535257 bayes_pls_golite062009
  • transcription factor activity
    		•  2.70303114587416 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.55186574506963 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.40923942043513 bayes_pls_golite062009
  • transcription activator activity
    		•  1.62405765585032 bayes_pls_golite062009
  • protein binding
    		•  1.60194768638501 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.5397618957429 bayes_pls_golite062009
  • transcription factor binding
    		•  1.38523780690867 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  1.37025623768659 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.26452462867497 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.14370842685155 bayes_pls_golite062009
  • structural molecule activity
    		•  1.03433454627943 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.61572149323953 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.58115018700114 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.405267736307896 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.256420113528322 bayes_pls_golite062009
  • catalytic activity
    		•  0.101795606736461 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle