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Protein Overview: sed5

General Information:
Name(s) found: sed5 / SPBC8D2.14c [Sanger Pombe]
Description(s) found:
Found 23 descriptions.
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  • SNARE Sed5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 309 amino acids

    Gene Ontology:
    Cellular Component: cis-Golgi network [ISSLink to PubMed article]
    membrane [IEA]
    integral to membrane [IEA]
    Biological Process: vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [RCALink to PubMed article]
    Molecular Function: SNAP receptor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQDRTAEF QACVTKTRSR LRTTTANQAV GGPDQTKHQK SEFTRIAQKI ANQINQTGEK  60
   61 LQKLSQLAKR KTLFDDRPVE IQELTFQIKQ SLSSLNSDIA SLQQVVKGNR NKPAQMNQHS 120
  121 ENVVVSLQNS LANTSMTFKD ILEIRTQNMK ASQNRTEKFV ASSSMNANPL INSGNSISPF 180
  181 ADYNDPKPEA NEDYLSLNLG DGANTRYEQM ALLESQTDTY SQQRMSSIQN IESTITELGG 240
  241 IFSQLAQMVS EQRETVQRID MHTDDIVSNI GSAQREIVKF YERMSSNRAL LFKIFGIVII 300
  301 FFLLWVLVT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..309] PSI-BLAST 32.69897 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • binding
    		•  2.61337814857056 bayes_pls_golite062009
  • protein transporter activity
    		•  2.305772311362 bayes_pls_golite062009
  • protein binding
    		•  1.82422117934251 bayes_pls_golite062009
  • phosphatidic acid binding
    		•  1.79882292156155 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • SNARE binding
    		•  0.71459772253941 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.00476738027966683 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle