YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sed5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQDRTAEF QACVTKTRSR LRTTTANQAV GGPDQTKHQK SEFTRIAQKI ANQINQTGEK  60
   61 LQKLSQLAKR KTLFDDRPVE IQELTFQIKQ SLSSLNSDIA SLQQVVKGNR NKPAQMNQHS 120
  121 ENVVVSLQNS LANTSMTFKD ILEIRTQNMK ASQNRTEKFV ASSSMNANPL INSGNSISPF 180
  181 ADYNDPKPEA NEDYLSLNLG DGANTRYEQM ALLESQTDTY SQQRMSSIQN IESTITELGG 240
  241 IFSQLAQMVS EQRETVQRID MHTDDIVSNI GSAQREIVKF YERMSSNRAL LFKIFGIVII 300
  301 FFLLWVLVT

Type	Start	End	Confidence
Cytoplasmic	1	288	0.84
Transmembrane Helix	289	308	0.95
Non-Cytoplasmic	309	309	0.86