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Protein Overview: SPCC895.03c

General Information:
Name(s) found: SPCC895.03c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • SUA5/yciO/yrdC family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: telomere maintenance [ISS]
    tRNA modification [ISS]
    Molecular Function: single-stranded telomeric DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKIQTVDT RLISFEKPSN DSEHPFEHTR VSIPPSETRS ALENAANILR NTDYPVAFPT  60
   61 ETVYGLGADA RRTEAVLSIY KAKNRPADNP LIVHVASLDQ LRRLLLSAYP KAKSEVKNQA 120
  121 HDSEEIIPKV YLPLIKKFWP GPLSILLPVV DEANPPVSPI VTAGQKTFAV RMPQHPVALA 180
  181 LISISDSPLA APSANASTRP SPTLAKHVYN DLQGKIPLIL DGGACGVGVE STVVNGLCDP 240
  241 PVILRPGGIS LEEIQSSGGA WERTKVFVAK KSDMETDFIP QTPGMKYRHY SPTAKVLLFV 300
  301 NYTESDAYGV FEKYLSEQGI TKEKQKIGVL CSKRWNEESF PSHCPFVFLH MGRDGHEITK 360
  361 NLFAQLRDLD LQGVDFVLVE GVSEENEGLA IMNRLGKAAS VVFEGPSH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..265] PSI-BLAST 58.045757 Hypothetical protein YciO
    2 View Details [266..408] PSI-BLAST 23.0 No description for 2yv4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • telomeric DNA binding
    		•  2.58217232196133 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  1.94245361512193 bayes_pls_golite062009
  • binding
    		•  1.44524229223398 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.23250290950095 bayes_pls_golite062009
  • DNA binding
    		•  0.84058090598415 bayes_pls_golite062009
  • RNA binding
    		•  0.63108051002538 bayes_pls_golite062009
  • catalytic activity
    		•  0.343636936190038 bayes_pls_golite062009
  • protein binding
    		•  0.207821310455625 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0989469098854212 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle