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Protein Overview: SPAC1071.02

General Information:
Name(s) found: SPAC1071.02 [Sanger Pombe]
Description(s) found:
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  • pir||T37484 probable dna repair/transcription protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74625985|sp|Q9UTR1.1|MMS19_SCHPO RecName: Full=DNA repair/transcription protein mms19 [NCBI NR]
  • gi|6179659|emb|CAB59878.1| TFIIH regulator (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115264|ref|NP_594352.1| TFIIH regulator (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • TFIIH regulator [Sanger Pombe]
  • DNA repair/transcription protein mms19 OS=Schizosaccharomyces pombe GN=mms19 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE DNA REPAIR/TRANSCRIPTION PROTEIN: Q9UTR1; [pompepVF.fasta]
  • Putative dna repair/transcription protein [pompep4896]
  • |||putative DNA repair protein [pompepnew.fasta]
  • SPAC1071.02 protein [4896.FASTAC]
  • |||involved in DNA repair (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative dna repair/transcription protein [Schizosaccharomyces pombe]gi|6179659|emb|CAB59878.1| SPAC1071.02 [Schizosaccharomyces pombe]gi|7492539|pir||T37484 probable dna repair/transcription protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||DNA repair protein |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9UTR1) Putative dna repair/transcription protein [pompep4896_normal_reversed]
  • |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC1071.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC1071.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |mms19||TFIIH regulator Mms19|Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • DNA repair/transcription protein mms19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mms19 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 1018 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    holo TFIIH complex [RCALink to PubMed article]
    nucleoplasm [ISSLink to PubMed article]
    Biological Process: nucleotide-excision repair [ISSLink to PubMed article]
    transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNLVALYL FSIDRSQDEA NDVVDRIVEE IVTDRMGIVD LVTSIGEYLT DNNISVRAKA  60
   61 VLLLSQTLGE LPKDRLPAKH VSVLLQFYLS RLDDEVTMKE NALGIGALLN MQNFPAQKIV 120
  121 DVCKALFSST DMPKYAQATR LNILKVFETI IDNYLFFISS QTRDAFFSGI CSTFAGEKDP 180
  181 RNLMLVFSML KKILSTFPID GFEQQFFDIT YCYFPITFRA PPDATNLAIT SDDLKIALRE 240
  241 TLVANDAFSK LLLPALFERL KASTVRIKID ALNIYIEACK TWRVGAYLWS AKDFWESIKQ 300
  301 EILNSTDAEL QNLALGALNT LASKFYKEEG FSSSFTEFVD MILIQLSQRL LEDVNVKSCG 360
  361 SCAAVFASLA SISVETFNYC SCNFLPSVLD LPMVNEPLEK QKGMLVFLEY VYKCLVLLYG 420
  421 KWRSKNQADI DNPLLVYKDK QLSFVSGSLM GTAKDETEIR MLALKVIFLM ASIKNFLTES 480
  481 ELTMVLQFLD DIAFDFSDPI KKKATECLKD LGLLKPDFLL LTSFPFAFSK LTDDVTAKSS 540
  541 SEETFKQYLS VLVSISEERS LFKALVIRLV EMLKDQFKSK EMSVDLVESI VQSLSVAFKE 600
  601 RNDRNEQEIP FFFEELLKQL FTLCFANCES MNVRCLIYVS QTINEIVRVN HFEFQEKFVG 660
  661 QLWKLYMENS NSDLIETEGC EKAAERFTLA ASLSDQKFLN LVVLLQGGLN GLSKKLHFIE 720
  721 KLNIELLNLL INVVFVTESP GVKISALRLI SSLINKCEKD EDISSFISSK GVTSLWDKVY 780
  781 TGTPKESEAA LDVLAWVDKA LVSRKHSEGI PLAFKLLDTL NLQNVGDSSV KALSIIIKDD 840
  841 PALSKENSYV EKLLYKQRFY ASVSPKILEH ISTATGGEKS LYLMLLSNVI GNVPKEIVIP 900
  901 DMPSILPLLL QCLSLSDISV KLSTLNVIHT SVKELTSLLT EYLDTLIPSL LAIPKDMNNP 960
  961 TVVRLLALKC LGSLPEFTPT TNLQLFRDKV IRGLIPCLDD PKRVVRTEAS RTRHKWYI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] MSA 3.049972 View MSA. No confident structure predictions are available.
    2 View Details [161..220] MSA 1.05498 View MSA. No confident structure predictions are available.
    3 View Details [221..432] PSI-BLAST 42.522879 No description for 2iaeA was found.
    4 View Details [433..1018] PSI-BLAST 83.0 Crystal Structure of The Cand1-Cul1-Roc1 Complex


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle