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Protein Overview: swc2

General Information:
Name(s) found: swc2 / SPBP35G2.13c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • chromatin remodeling complex subunit Swc2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 316 amino acids

    Gene Ontology:
    Cellular Component: Swr1 complex [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    histone exchange [IPILink to PubMed article]
    regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [IEA]
    transcription factor activity [IEA]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATESLVAG RTRRANAGNK MRELLEKEHL RMTQQNAEIE KEDEEYNIEE EEEAERDIEI  60
   61 SSESSDEEAE LKKLEEEGEE VEKILRDEER IKKRKIQKNR AANLQRTLQP PKRPTPSAAS 120
  121 EVPKKKYKKI KVDPSARRTS SRMHTVLMAQ STETRLQEAK PRRKYTVSAS ANRQKGTMTQ 180
  181 QQRFEEAAKT EAQNLSSLRN YVHLEEQRRL RLKRNAAKHR QLREPILKFI SKTISTEDGR 240
  241 EASNYYVAPL EHPLCHSAPP LQMPQHRAVE CVITGKPAIY LDPVTQLPIS NVQAFQQVRE 300
  301 VYNQRYSWSA MLNLFH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] deduced N/A No confident structure predictions are available.
    2 View Details [78..224] PSI-BLAST 4.09691 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
    3 View Details [225..316] FFAS03 1.17 Solution structure of zinc finger HIT domain in protein FON

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  2.48298025894013 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.27695396544623 bayes_pls_golite062009
  • DNA binding
    		•  2.13220564234684 bayes_pls_golite062009
  • binding
    		•  2.04387193075129 bayes_pls_golite062009
  • transcription activator activity
    		•  0.570282420961288 bayes_pls_golite062009
  • protein binding
    		•  0.520486355666439 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.512364998565023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle