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Protein Overview: SPBC17D11.02c

General Information:
Name(s) found: SPBC17D11.02c [Sanger Pombe]
Description(s) found:
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  • pir||T39713 zinc finger protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626911|sp|O74757.1|HRD1_SCHPO RecName: Full=ERAD-associated E3 ubiquitin-protein ligase hrd1 [NCBI NR]
  • gi|3650401|emb|CAA21073.1| ubiquitin-protein ligase Hrd1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113168|ref|NP_596376.1| synoviolin homolog [Schizosaccharomyces pombe] [NCBI NR]
  • synoviolin homolog [Sanger Pombe]
  • ERAD-associated E3 ubiquitin-protein ligase hrd1 OS=Schizosaccharomyces pombe GN=hrd1 PE=1 SV=1 [Swiss-Prot]
  • ZINC FINGER PROTEIN; ZF-C3HC4 TYPE (RING FINGER): O74757; [pompepVF.fasta]
  • PUTATIVE ZINC FINGER C3H4 TYPE: O74757; [pompepV13]
  • Putative zinc finger C3H4 type [pompep4896]
  • |||zinc finger protein [pompepnew.fasta]
  • SPBC17D11.02c protein [4896.FASTAC]
  • |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative zinc finger C3H4 type [Schizosaccharomyces pombe]gi|3650401|emb|CAA21073.1| SPBC17D11.02c [Schizosaccharomyces pombe]gi|7493739|pir||T39713 zinc finger protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||synoviolin |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O74757) Putative zinc finger C3H4 type [pompep4896_normal_reversed]
  • |hrd1||ubiquitin-protein ligase Hrd1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC17D11.02c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC17D11.02c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |hrd1||ubiquitin-protein ligase Hrd1, synviolin family|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • ERAD-associated E3 ubiquitin-protein ligase hrd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrd1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 677 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [ISSLink to PubMed article]
    cell cortex [IDALink to PubMed article]
    integral to membrane [IEA]
    Biological Process: ER-associated protein catabolic process [ISSLink to PubMed article]
    protein ubiquitination [ISSLink to PubMed article]
    Molecular Function: ubiquitin-protein ligase activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFILYVLAS LVLFGLSVLL SLYSSANVYS ATVMISQSPV HITIGLNVCL CLFFAIANAL  60
   61 KTLLFGSLQT FELELLYEQF WITLTEIMLA ITVFREAISI SFFMLLSTLM FARVFHSICS 120
  121 FRTERLQIQL TDQRFHIFSR LTCAYFVLSI LDASLIYLCF TSEHLGDKST RMLFVCEFSV 180
  181 LLLNLTIEAS KLCIYLYEAR HLDQVWDEKS TYLFRLEVCR DGLRLLAYSL LFMYQFPYVS 240
  241 VPIYSIRQMY TCFYSLFRRI REHARFRQAT RDMNAMYPTA TEEQLTNSDR TCTICREEMF 300
  301 HPDHPPENTD EMEPLPRGLD MTPKRLPCGH ILHFHCLRNW LERQQTCPIC RRSVIGNQSS 360
  361 PTGIPASPNV RATQIATQVP NPQNTPTTTA VPGITNSSNQ GDPQASTFNG VPNANSSGFA 420
  421 AHTQDLSSVI PRRIALRDGW TMLPIPGTRR IPTYSQSTST TNPSATPTTG DPSNSTYGGP 480
  481 QTFPNSGNNP NFNRGIAGIV PPGWRLVSSN TQSLSTNSAM TSLYQNASSA DNNLGSSLPN 540
  541 VVPLSRGLTQ SNETSNTFPA ASSNISSQLR ELHTKIDELR ETVSNFRADY NSIRTSLNQL 600
  601 EAASGINERI QTTSADSLLN SNGMSGTEGF ENTQTSITTN DNQSSILTSS DQTSPFATDE 660
  661 DRQNSRNVQL ETVDENF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] MSA 2.071963 View MSA. No confident structure predictions are available.
    2 View Details [199..292] deduced N/A No confident structure predictions are available.
    3 View Details [293..360] PSI-BLAST 4.30103 No description for 2eclA was found.
    4 View Details [361..498] FFAS03 1.37 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
    5 View Details [499..677] PSI-BLAST 3.221849 Fibrinogen


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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