YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: taf50

General Information:
Name(s) found: taf50 / SPCC16C4.18c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T41108 transcription initiation factor tfiid 60 kd subu nit - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626857|sp|O74462.1|TAF6_SCHPO RecName: Full=Transcription initiation factor TFIID subunit 6; AltName: Full=TBP-associated factor 6; AltName: Full=TBP-associated factor 50 kDa; Short=TAFII-50; Short=TAFII50 [NCBI NR]
  • gi|3560272|emb|CAA20756.1| histone H4-like TAF Taf6, SAGA complex subunit [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075428|ref|NP_587928.1| histone H4-like TAF (PMID 11972332) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • histone H4-like TAF [Sanger Pombe]
  • Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe GN=taf6 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT; TAF(II) COMPLEX (TBP-ASSOCIATED PROTEIN COMPLEX); PUTATIVE SAGA COMPLEX ; POSSIBLY INVOLVED IN CHROMATIN ARCHITECTURE; TRANSCRIPTIONAL ACTIVATOR; SIMILAR TO S. CEREVISIAE TAF60: O74462; [pompepVF.fasta]
  • TRANSCRIPTION INITIATION FACTOR TFIID 62 KD SUBUNIT: O74462; [pompepV13]
  • Transcription initiation factor tfiid 62 kd subunit [pompep4896]
  • |taf50||transcription initiation factor TFIID subunit (PMID 11972332) [pompepnew.fasta]
  • Taf50 protein (Spcc16c4.18c protein) [4896.FASTAC]
  • |taf50||transcription initiation factor activity|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • transcription initiation factor tfiid 62 kd subunit [Schizosaccharomyces pombe]gi|3560272|emb|CAA20756.1| SPCC16C4.18c [Schizosaccharomyces pombe]gi|7493498|pir||T41108 transcription initiation factor tfiid 60 kd subu nit - fission yeast (Schizosaccharo [nrdb_11152004_Chlamydomonas]
  • |taf50||histone H4-like TAF |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (O74462) Transcription initiation factor tfiid 62 kd subunit [pompep4896_normal_reversed]
  • |taf6|taf50|histone H4-like TAF Taf6, SAGA complex subunit|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC16C4.18c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 452 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    transcription factor TFIID complex [IDALink to PubMed article]
    nuclear chromatin [IC]
    cytosol [IDALink to PubMed article]
    SAGA complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ICLink to PubMed article]
    positive regulation of transcription [IC]
    histone acetylation [IC]
    transcription initiation from RNA polymerase II promoter [ISS]
    Molecular Function: transcription initiation factor activity [IEA]
    DNA binding [IEA]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTVWNIES IKDVAEMLGI GNLADEPAAA IAMDLEYRIH QVVQEATKFM VHSKRTVLTS  60
   61 ADISSALRTL NVEPLYGFNN SRPLEFHEAA VGAGQNSLYY LDDEEVDFEK IINAPLPKVP 120
  121 RNISYSAHWL AIEGVQPAIP QNPTPSDHTV GEWASKGTSG VMPGASTAAK EARNGVTSMD 180
  181 NVEIKPLVRH VLSKELQLYF ERITSALLDE TNVELRDAAL SSLRDDPGLH QLLPYFIMFL 240
  241 SDSVTRNLGN LVVLTTLMHM AWALLDNPNL FVEPYVQQLM PSILTCLVAK RLGSDPNNHE 300
  301 HYALRDLAAF LLGIVCDRFG NVYYTLKPRV TRTALKAFLD NTKPYSTHYG AIKGLKTMGK 360
  361 EAIRVLVVPN IKVYEVLVRK TLEKGNEEEI YEANKCMDAL YDALLLLRDD QLPNQRTLPP 420
  421 NASGLLEKNV GSLMAEKIMK ENDTSLLLGL LE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..145] PSI-BLAST 21.69897 TAF(II)62
    2 View Details [146..245] MSA 1.042977 View MSA. No confident structure predictions are available.
    3 View Details [246..452] Pfam 61.721246 No description for PF07571.4 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  9.25279783093877 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.97252613675094 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  5.97252613675094 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.49886535711761 bayes_pls_golite062009
  • DNA binding
    		•  4.24625687315724 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.22222466548509 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.08606081850613 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  3.96621818094279 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.93473976418251 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.91614625961398 bayes_pls_golite062009
  • binding
    		•  3.79827182235984 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.38611688546892 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.35015681315177 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.28941584139552 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.1782337747057 bayes_pls_golite062009
  • transcription factor activity
    		•  2.31114764804139 bayes_pls_golite062009
  • protein binding
    		•  1.2861218811362 bayes_pls_golite062009
  • transcription activator activity
    		•  1.25487495162413 bayes_pls_golite062009
  • transcription factor binding
    		•  1.15204005455906 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.1297723528047 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.10331930589736 bayes_pls_golite062009
  • centromeric DNA binding
    		•  1.03586371237592 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.01502031330902 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.72554769377984 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.437760073242714 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • transferase activity
    		•  0.106182831892296 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle