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Protein Overview: trs20

General Information:
Name(s) found: trs20 / SPBC11G11.04 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • TRAPP complex subunit Trs20 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 136 amino acids

    Gene Ontology:
    Cellular Component: TRAPP complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cis-Golgi network [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    endoplasmic reticulum [IEA]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    regulation of Rab GTPase activity [IC]
    Molecular Function: Rab guanyl-nucleotide exchange factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAYAAIIGT KDNPVYELEM GPINEKLDRS LNSHLNQFIV HSSLDIVDQL QWTSNAFYMK  60
   61 TIDQFHEMYI SAYVTPSNMR FMLLHQNQSA DNIKLFFQEL HELYIKTLMS PFYQPNQPIR 120
  121 SQAFDLKVRS IARRYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 43.045757 No description for 2j3wA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • clathrin binding
    		•  2.46091145052374 bayes_pls_golite062009
  • protein-cysteine S-palmitoleyltransferase activity
    		•  2.09062141077479 bayes_pls_golite062009
  • protein-cysteine S-acyltransferase activity
    		•  2.09062141077479 bayes_pls_golite062009
  • binding
    		•  1.96298363185486 bayes_pls_golite062009
  • SNAP receptor activity
    		•  1.56904739000414 bayes_pls_golite062009
  • transporter activity
    		•  1.19620787652793 bayes_pls_golite062009
  • protein transporter activity
    		•  0.83435143456632 bayes_pls_golite062009
  • palmitoyltransferase activity
    		•  0.76687594030379 bayes_pls_golite062009
  • protein binding
    		•  0.690762864611134 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.326071696170609 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.131410992694836 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0936690070284361 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0846345824909659 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0820309452260982 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle