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Protein Overview: SPCC1235.09

General Information:
Name(s) found: SPCC1235.09 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • histone deacetylase complex subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 564 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Rpd3L-Expanded complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Set3 complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IC]
    chromatin silencing [ISSLink to PubMed article]
    histone deacetylation [ISSLink to PubMed article]
    negative regulation of gene-specific transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNQVNYII WRYLKECGYS HTKFAFERET GIQNLDKQWG STCQVGALVE ILQKGLQYVE  60
   61 LEKHYVDNHS SNEEASKTSI DGESLVNENP CKLPFYLTVP HICETTLTKA DSTNGFCEHN 120
  121 NSNDHQLKIL QDKGSGSPSS PVMPFKDKIE KRDIDITMAD ESNVEKDPAR PIAVYNSSPV 180
  181 TEITEIKQVT FTGGEDIKSD FFKVIPTKHP VTCADWRPLL QENYHVYEFS IGMTNATLAS 240
  241 VSICEEQNDF KAKTDYCLQS SFDNQDITGV AWNNSGSFLA YAFFSGVIEI YDSHGSQILS 300
  301 FHNNKGPVLS LKWSGTDTYL AAGSADGTIT LFDQLKQTQY SIDTLASSVL DIEWISFDEF 360
  361 VTSDVEGSLR VYKVDGKAPV STVSHAHDNS IVALRYNLRI SLLLTASSDT TVKLWSRGDA 420
  421 GAFECLHVFS FSSPVNCIDW NLREGTPILA VASNSIVSMY NAISLQQLAV FMRHTAPVSA 480
  481 LSFSHNGRYL ATGDTSGGVC IWSCKTAKLF KELGSDNSEL IAVTNVLPEE QVNFLRWSFD 540
  541 DKDLLIGKQK KEIICCCDFL HDSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 4.30103 N-terminal domain of Lissencephaly-1 protein (Lis-1)
    2 View Details [85..209] deduced N/A No confident structure predictions are available.
    3 View Details [210..564] PSI-BLAST 60.221849 No description for 2gnqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle