YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1235.09
Organism:	Schizosaccharomyces pombe
Length:	564 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1235.09.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	465.0	[0..7]	[564..1160]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	441.0	[0..12]	[564..1038]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	440.0	[0..17]	[564..905]
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	437.0	[0..10]	[564..897]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	435.0	[0..24]	[564..574]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNQVNYII WRYLKECGYS HTKFAFERET GIQNLDKQWG STCQVGALVE ILQKGLQYVE  60
   61 LEKHYVDNHS SNEEASKTSI DGES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.30103
Match:	1uujA
Description:	N-terminal domain of Lissencephaly-1 protein (Lis-1)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [85-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVNENPCKLP FYLTVPHICE TTLTKADSTN GFCEHNNSND HQLKILQDKG SGSPSSPVMP  60
   61 FKDKIEKRDI DITMADESNV EKDPARPIAV YNSSPVTEIT EIKQVTFTGG EDIKSDFFKV 120
  121 IPTKH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [210-564]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVTCADWRPL LQENYHVYEF SIGMTNATLA SVSICEEQND FKAKTDYCLQ SSFDNQDITG  60
   61 VAWNNSGSFL AYAFFSGVIE IYDSHGSQIL SFHNNKGPVL SLKWSGTDTY LAAGSADGTI 120
  121 TLFDQLKQTQ YSIDTLASSV LDIEWISFDE FVTSDVEGSL RVYKVDGKAP VSTVSHAHDN 180
  181 SIVALRYNLR ISLLLTASSD TTVKLWSRGD AGAFECLHVF SFSSPVNCID WNLREGTPIL 240
  241 AVASNSIVSM YNAISLQQLA VFMRHTAPVS ALSFSHNGRY LATGDTSGGV CIWSCKTAKL 300
  301 FKELGSDNSE LIAVTNVLPE EQVNFLRWSF DDKDLLIGKQ KKEIICCCDF LHDSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.221849
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits