YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC16G5.05c

General Information:
Name(s) found: SPBC16G5.05c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T39597 probable inositol regulator - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582341|sp|O60119.1|YH75_SCHPO RecName: Full=Vesicle-associated membrane protein-associated protein C16G5.05c; Short=VAMP-associated protein C16G5.05c; AltName: Full=VAP homolog 1 [NCBI NR]
  • gi|3133099|emb|CAA19025.1| MSP domain [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113546|ref|NP_596754.1| MSP domain [Schizosaccharomyces pombe] [NCBI NR]
  • MSP domain [Sanger Pombe]
  • Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1 [Swiss-Prot]
  • VESICLE ASSOCIATED MEMBRANE PROTEIN; PUTATIVE INOSITOL REGULATOR: O60119; [pompepVF.fasta]
  • Vesicle associated membrane protein, putative inositol regulator [pompep4896]
  • |||vesicle associated membrane protein [pompepnew.fasta]
  • SPBC16G5.05c protein [4896.FASTAC]
  • |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • vesicle associated membrane protein; putative inositol regulator [Schizosaccharomyces pombe]gi|3133099|emb|CAA19025.1| SPBC16G5.05c [Schizosaccharomyces pombe]gi|7492671|pir||T39597 probable inositol regulator - fission yeast (Schizosaccharomyces pombe [nrdb_11152004_Chlamydomonas]
  • (O60119) Vesicle associated membrane protein, putative inositol regulator [pompep4896_normal_reversed]
  • hypothetical protein SPBC16G5.05c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC16G5.05c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||VAP family protein |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 383 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [ICLink to PubMed article]
    integral to membrane [ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: inositol metabolic process [ISSLink to PubMed article]
    protein targeting to ER [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVECSGELF FYPPFTTMSK ELISVHNPNP EPVIFKVKTT APKHYCVRPN SGKIEPKSTV  60
   61 NVQVLLQAMK EEPAPDFKCR DKFLIQSMAI GDADTSNVEN YHEFWTEMEK QGRSIFDRKI 120
  121 RCVYSTKQPP QSADKQVENT STSNPPVSVE GSENLASSVG GPTAVGVSLD EAQNDFNGAK 180
  181 DHLSNGVNTV VPDSTFRSTF ESAQIPDASV VQTVVTDADN GAASVKDTIV TAESASSKGA 240
  241 DVARSKVQDI IDNEIPKPSE SPRRSVSSTP PVHPPPPVPQ NLSAVNEEFD TKKNDFDSKL 300
  301 PESTPAVEKV SENLGSETRE SLQGAKPAAG AHSSDNALEQ IKPSYSADPS SSTGASLTES 360
  361 PGIPPNIVII LCLIFFLIGY LFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 22.39794 Solution structure of the MSP domain of mouse VAMP-associated proteinA
    2 View Details [165..383] FFAS03 1.08 No description for 2j63A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle