YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16G5.05c
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVECSGELF FYPPFTTMSK ELISVHNPNP EPVIFKVKTT APKHYCVRPN SGKIEPKSTV  60
   61 NVQVLLQAMK EEPAPDFKCR DKFLIQSMAI GDADTSNVEN YHEFWTEMEK QGRSIFDRKI 120
  121 RCVYSTKQPP QSADKQVENT STSNPPVSVE GSENLASSVG GPTAVGVSLD EAQNDFNGAK 180
  181 DHLSNGVNTV VPDSTFRSTF ESAQIPDASV VQTVVTDADN GAASVKDTIV TAESASSKGA 240
  241 DVARSKVQDI IDNEIPKPSE SPRRSVSSTP PVHPPPPVPQ NLSAVNEEFD TKKNDFDSKL 300
  301 PESTPAVEKV SENLGSETRE SLQGAKPAAG AHSSDNALEQ IKPSYSADPS SSTGASLTES 360
  361 PGIPPNIVII LCLIFFLIGY LFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	361	0.86
Transmembrane Helix	362	382	0.92
Cytoplasmic	383	383	0.84