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Protein Overview: mrps17

General Information:
Name(s) found: mrps17 / SPBC409.14c [Sanger Pombe]
Description(s) found:
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  • pir||T40441 30s ribosomal protein s17-like protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626002|sp|Q9UUB0.1|RT17_SCHPO RecName: Full=40S ribosomal protein S17, mitochondrial [NCBI NR]
  • gi|5731921|emb|CAB52616.1| mitochondrial ribosomal protein subunit S17 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112256|ref|NP_595464.1| mitochondrial ribosomal protein subunit S17 [Schizosaccharomyces pombe] [NCBI NR]
  • mitochondrial ribosomal protein subunit S17 [Sanger Pombe]
  • 40S ribosomal protein S17, mitochondrial OS=Schizosaccharomyces pombe GN=mrps17 PE=2 SV=1 [Swiss-Prot]
  • MITOCHONDRIAL RIBOSOMAL PROTEIN S17: Q9UUB0; [pompepVF.fasta]
  • Mitochondrial ribosomal protein s17 [pompep4896]
  • |||mitochondrial ribosomal protein S17 [pompepnew.fasta]
  • SPBC409.14c protein [4896.FASTAC]
  • |||mitochondrial ribosomal protein (S17)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • mitochondrial ribosomal protein s17 [Schizosaccharomyces pombe]gi|5731921|emb|CAB52616.1| SPBC409.14c [Schizosaccharomyces pombe]gi|7489955|pir||T40441 30s ribosomal protein s17-like protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |mrps17||mitochondrial ribosomal protein subunit s17|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9UUB0) Mitochondrial ribosomal protein s17 [pompep4896_normal_reversed]
  • |mrps17||mitochondrial ribosomal protein subunit S17|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • mitochondrial ribosomal protein S17 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • mitochondrial ribosomal protein subunit S17; similar to S. cerevisiae YMR188C [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |mrps17||mitochondrial ribosomal protein subunit S17 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • 37S ribosomal protein S17, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrps17 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 90 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [ISSLink to PubMed article]
    Biological Process: mitochondrial translation [RCALink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]
    structural constituent of ribosome [ISSLink to PubMed article]
    rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNYVGIVI SRAMPKTAKV RVAKEKFHPV VKKYVTQYQN YMVQDDLNCN VGDAVTIQPC  60
   61 RPRSATKRFE IIKILSTANR MSPASEISKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] PSI-BLAST 23.154902 No description for 2gy9Q was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69275272183315 bayes_pls_golite062009
  • DNA binding
    		•  1.97161900822354 bayes_pls_golite062009
  • binding
    		•  1.81248034004657 bayes_pls_golite062009
  • RNA binding
    		•  1.76502371106766 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.83151863389272 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.72238927168323 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.157816897728538 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.0760793505650201 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle