YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: sen54

General Information:
Name(s) found: sen54 / SPCC613.09 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • tRNA-splicing endonuclease subunit Sen54 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 384 amino acids

    Gene Ontology:
    Cellular Component: mitochondrial membrane [IDALink to PubMed article]
    mitochondrial outer membrane [ISSLink to PubMed article]
    tRNA-intron endonuclease complex [ISSLink to PubMed article]
    Biological Process: tRNA-type intron splice site recognition and cleavage [ISS]
    Molecular Function: tRNA-intron endonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQDEDNPF TNLETTVDVT EEIQDWRFLS NVEKDQGTYT IPKRGQKDFE PDGTNKQHSA  60
   61 LDLSRKAMFD ALSVERLISA KHAIIATWNA QNGMSCVEKA HGPLFKTMGT ADSQNRMWLL 120
  121 PEETLYLVER GSMECWSEEG LPMSLQAVYS ASIPLCGSLE NYLVYAHLRR CGFSVIRSNL 180
  181 VPVKEDEYRC DSKIMNFKDL LFLGLGKASQ ILQTFNFRKL AFPFSKRRRQ SILLHDTFYT 240
  241 YEEVYHDLQI VRGYVPIACN LITSSDSLFQ ITFHAYKPSA SFKKSALSEP DFRICVVSSQ 300
  301 DTLLPTIFEI DALFSSTPLR QNMPQHMFQR LKEGYRNIII AIVDYGVISY IRLSDVCFEE 360
  361 KVYTDFSKKG SKRKRVSKKF QQLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] deduced N/A No confident structure predictions are available.
    2 View Details [100..254] PSI-BLAST 37.39794 Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
    3 View Details [255..384] MSA 1.029996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle