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Protein Overview: SPAC22F8.08

General Information:
Name(s) found: SPAC22F8.08 [Sanger Pombe]
Description(s) found:
Found 22 descriptions.
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  • COPII vesicle coat protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 926 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    COPII vesicle coat [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    autophagy [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEDAFYGK GSYGASSGNS NIPPQGFQPV YPVAGQLDNT APYVGAVAEG TAEGIVSNGE  60
   61 YAVGAMGAAP TNIIGSVDQQ PPVSHTSHKS RRQYPAEVFE LTNTLAASPA PPSLSEPSYV 120
  121 MARTPSSSPY PHDRAEVGTK SLSAQFGGMS LGADGAAAMP TNELVSVDLY NQTPEISDLT 180
  181 SPPPPINLPL SYSATGAATS NCPPKYVRST INCVPTTNSL LKKSKIPFAL VIRPYTSLVE 240
  241 EDDPVPVVTD TIISRCRRCR MYINPFSIFI DNGHRYRCNS CGIVNEVPQS YDWDSFRNVQ 300
  301 RDRWQRPELN YAVVDFIAPQ EYMVRAPQPL VYVFLIDISF VSISSGMVGT ASRAILESLD 360
  361 RIPNKEGRAK VAFIGVDSAL HFFSVSPGAE EATQLVVSDL EEPFLPRNQD LLLNLRECRQ 420
  421 GIENLLERFQ SMFATTRDSS NALGPGLKAA HRLIENIGGK ICCLISSLPN VGVGKLELRE 480
  481 DPKLLGTNRE SSLLHPNDSF YKSFAVECST SQVSVDMFLF SSQYQDVATL SCLPRYTSGK 540
  541 TQFYHRWNAS RSEDALKFAS ELTNYLSMEI ELEAVMRVRG SNGLRMSSFY GNFFNRSSDL 600
  601 CAFPSFPRDQ SYVVEVVIED TITKPFVSFQ TAMLHTTCNG ERRIRVLTIS LPTTNSMTDL 660
  661 YASADQVAIA QYLTVRASEK ALSSTLNEAR DSIISKLVEI LEVYKKNLAG QNTGAAIPLQ 720
  721 ISTNLRLLPL LCLALTKHTG FRRSSHISSD LRSIALCYLS TLPTPLLMRY IYPTLYSLHD 780
  781 MPIEAGTVTE QGVVLPSALN LTSALLQSFG LYLVDTHIHQ FLYIGKDAVP QLLIDAFGVN 840
  841 SLADLKAGRF TMPVIDNPLN VRINAILGKL RSLDKGSTIM PSLYLVRGDG DPQLRSWFFS 900
  901 HFVEDRSENS PSYLQFLQTL KEKVRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..926] PSI-BLAST 1000.0 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.9315281375853 bayes_pls_golite062009
  • binding
    		•  1.90456497151578 bayes_pls_golite062009
  • transporter activity
    		•  1.30184925420876 bayes_pls_golite062009
  • collagen binding
    		•  0.568860931913098 bayes_pls_golite062009
  • integrin binding
    		•  0.56855067092085 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.464562340940318 bayes_pls_golite062009
  • protein complex binding
    		•  0.35582708645524 bayes_pls_golite062009
  • DNA binding
    		•  0.155617838235236 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0661625326929309 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.027305897174472 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0179622467180781 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0153681945260867 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle