YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC22F8.08
Organism:	Schizosaccharomyces pombe
Length:	926 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC22F8.08.

Description	E-value	Query Range	Subject Range
SEC24_NEUCR - Protein transport protein sec-24 OS=Neurospora crassa GN=sec-24 PE=3 SV=1 SEC24_NEUCR - Protein transport protein sec24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / ...	964.0	[0..1]	[924..1]
SEC24_CHAGB - Protein transport protein SEC24 OS=Chaetomium globosum GN=SEC24 PE=3 SV=1 SEC24_CHAGB - Protein transport protein SEC24 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / N...	958.0	[0..60]	[924..82]
gi\|46124013, gi\|... - gi\|46124013\|ref\|XP_386560.1\| hypothetical protein FG06384.1 [Gibberella zeae PH-1], gi\|42551745\|gb\|E...	955.0	[0..1]	[924..1]
SEC24_PODAS - Protein transport protein SEC24 OS=Podospora anserina GN=SEC24 PE=3 SV=1	955.0	[0..12]	[924..2]
gi\|114631269 - gi\|114631269\|ref\|XP_001144683.1\| PREDICTED: SEC24-related protein C isoform 5 [Pan troglodytes]	946.0	[0..2]	[925..66]
gi\|39961805, gi\|... - gi\|39961805\|ref\|XP_364719.1\| hypothetical protein MG09564.4 [Magnaporthe grisea 70-15], gb\|EAA53814....	933.0	[0..12]	[923..1]
SEC24_EMENI - Protein transport protein sec24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / N... SEC24_EMENI - Protein transport protein sec24 OS=Emericella nidulans GN=sec24 PE=3 SV=1	930.0	[0..17]	[924..3]
gi\|74204998 - gi\|74204998\|dbj\|BAE20977.1\| unnamed protein product [Mus musculus]	927.0	[0..122]	[925..1]

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Predicted Domain #1

Region A:
Residues: [1-926]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEDAFYGK GSYGASSGNS NIPPQGFQPV YPVAGQLDNT APYVGAVAEG TAEGIVSNGE  60
   61 YAVGAMGAAP TNIIGSVDQQ PPVSHTSHKS RRQYPAEVFE LTNTLAASPA PPSLSEPSYV 120
  121 MARTPSSSPY PHDRAEVGTK SLSAQFGGMS LGADGAAAMP TNELVSVDLY NQTPEISDLT 180
  181 SPPPPINLPL SYSATGAATS NCPPKYVRST INCVPTTNSL LKKSKIPFAL VIRPYTSLVE 240
  241 EDDPVPVVTD TIISRCRRCR MYINPFSIFI DNGHRYRCNS CGIVNEVPQS YDWDSFRNVQ 300
  301 RDRWQRPELN YAVVDFIAPQ EYMVRAPQPL VYVFLIDISF VSISSGMVGT ASRAILESLD 360
  361 RIPNKEGRAK VAFIGVDSAL HFFSVSPGAE EATQLVVSDL EEPFLPRNQD LLLNLRECRQ 420
  421 GIENLLERFQ SMFATTRDSS NALGPGLKAA HRLIENIGGK ICCLISSLPN VGVGKLELRE 480
  481 DPKLLGTNRE SSLLHPNDSF YKSFAVECST SQVSVDMFLF SSQYQDVATL SCLPRYTSGK 540
  541 TQFYHRWNAS RSEDALKFAS ELTNYLSMEI ELEAVMRVRG SNGLRMSSFY GNFFNRSSDL 600
  601 CAFPSFPRDQ SYVVEVVIED TITKPFVSFQ TAMLHTTCNG ERRIRVLTIS LPTTNSMTDL 660
  661 YASADQVAIA QYLTVRASEK ALSSTLNEAR DSIISKLVEI LEVYKKNLAG QNTGAAIPLQ 720
  721 ISTNLRLLPL LCLALTKHTG FRRSSHISSD LRSIALCYLS TLPTPLLMRY IYPTLYSLHD 780
  781 MPIEAGTVTE QGVVLPSALN LTSALLQSFG LYLVDTHIHQ FLYIGKDAVP QLLIDAFGVN 840
  841 SLADLKAGRF TMPVIDNPLN VRINAILGKL RSLDKGSTIM PSLYLVRGDG DPQLRSWFFS 900
  901 HFVEDRSENS PSYLQFLQTL KEKVRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	1.9315281375853	bayes_pls_golite062009
binding	1.90456497151578	bayes_pls_golite062009
transporter activity	1.30184925420876	bayes_pls_golite062009
collagen binding	0.568860931913098	bayes_pls_golite062009
integrin binding	0.56855067092085	bayes_pls_golite062009
nucleic acid binding	0.464562340940318	bayes_pls_golite062009
protein complex binding	0.35582708645524	bayes_pls_golite062009
DNA binding	0.155617838235236	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0661625326929309	bayes_pls_golite062009
pyrophosphatase activity	0.027305897174472	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0179622467180781	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0153681945260867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: