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Protein Overview: nup120

General Information:
Name(s) found: nup120 / SPBC3B9.16c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • nucleoporin Nup120 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1136 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    Nup107-160 complex [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    nuclear pore [IDALink to PubMed article][TASLink to PubMed article]
    Biological Process: cell division [IMPLink to PubMed article]
    nucleocytoplasmic transport [TASLink to PubMed article]
    nuclear pore distribution [IMPLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    poly(A)+ mRNA export from nucleus [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELKHAVVP IDLQSFCLEG TLALWVPALE NDSEDDSEAI ETADDNEKLF KKECVAYDAG  60
   61 VYTSNKSKGS QTLRWSIFQN RTLTIFDVSL NSKKEPLSKF NVKIHFPSNV MKDGVAFSFS 120
  121 EHSDTTIIYA ITHARVLYYI RLSKTWFQLP DARLDDDWCL CYRPISFLNQ KPDLMAAIST 180
  181 SEICVSFFNG GLTKIILNPK DASHYEQHID DSSYLFSLKK YLSLQAFKAD YRSPNTIISM 240
  241 IFLSTYNVLV MLSLDYKLKV LDLSTNQCVE TIELSQTILP LQSFPYLTSD HTTNSFIALY 300
  301 YPDNSHGSFS IYKLNANAHS FKLNVVIEKG IIPPSLPDDE FIPWMLSDFQ LISSEGSQSK 360
  361 FLLIIAWKSN LNTVIQKCNL SLDQDESFSC VWSHSLDSFS LIEKTFFDVP TNMSSGDISE 420
  421 IWLQHIFAHN TSIESIQVAL LSFQNSSSQV SKNKLDKFGA LTISELKNAV LSSIVSTIQI 480
  481 EPNSDLTGYD YYEYKRLLYN EWERFAKLVA YLDHFGDEIL SINFDPSNAV TYINYANKVA 540
  541 FIRDPYLIES FDEEPLTKLI SSLETDDPSL IEGYQILDLG RSLHSCMSFS TLSEIRYSLR 600
  601 ELVQDLPSYS LFDTLWVFYD KHIYPNVDPD YISTLIDTLV SLENPMRDID SLIQRLRSFD 660
  661 IYNHSAQSPS LFLCASVARV LDSILKKFQV SIEGFIFLLS LITSQQDYEL QSKFAGCDKL 720
  721 FLSLLEDWRL VSFLLENSAL LLEKFEEEDV DSTNCNLNTM EALASVNTAL QFFSALNYSE 780
  781 CFSESQISPL HATVISSLSA IFIRDDTEND LVTELVEKLF LFKQYNACMQ LIGWLNSDPI 840
  841 AVYLKALIYL KSKEAVKAVR CFKTTSLVLY SHTSQFAVLR EFQEIAEKYH HQNLLSCYYL 900
  901 HLSKKLFEES AYIDALEFSL LADASKETDD EDLSIAITHE TLKTACAAGK FDAAHVALMV 960
  961 LSTTPLKKSC LLDFVNQLTK QGKINQLLNY SMPTLRQDVD NLLERKAFQM INVESQPCWY1020
 1021 NILFSWRYKH QNYRDAAAII YEKLSRYIST TELIGKKERT FIIEHYLIVL NTLELLPKED1080
 1081 TWILVTDMSV DKEPDPNFLP QKLLTLDAIV AEYHLQLKDV AVQVTAEMSS AMNIDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..565] FFAS03 2.02 Actin interacting protein 1
    2 View Details [566..720] MSA 1.041994 View MSA. No confident structure predictions are available.
    3 View Details [721..880] deduced N/A No confident structure predictions are available.
    4 View Details [881..1052] MSA 1.034958 View MSA. No confident structure predictions are available.
    5 View Details [1053..1136] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.23598589443994 bayes_pls_golite062009
  • RNA binding
    		•  1.36802414720047 bayes_pls_golite062009
  • protein binding
    		•  1.35242477415251 bayes_pls_golite062009
  • transporter activity
    		•  1.23232041140488 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.750051725890322 bayes_pls_golite062009
  • protein transporter activity
    		•  0.487974053204324 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.271959658140432 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0245411309982146 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle