| Protein: | nup120 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1136 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nup120.
| Description | E-value | Query Range |
Subject Range |
|
|
1015.0 | [0..34] | [1104..35] |
|
|
1014.0 | [0..30] | [1093..39] |
|
|
973.0 | [0..46] | [1099..71] |
|
|
967.0 | [0..46] | [1099..71] |
|
|
965.0 | [0..19] | [1099..27] |
|
|
923.0 | [0..44] | [1099..34] |
|
Region A: Residues: [1-565] |
1 11 21 31 41 51
| | | | | |
1 MNELKHAVVP IDLQSFCLEG TLALWVPALE NDSEDDSEAI ETADDNEKLF KKECVAYDAG 60
61 VYTSNKSKGS QTLRWSIFQN RTLTIFDVSL NSKKEPLSKF NVKIHFPSNV MKDGVAFSFS 120
121 EHSDTTIIYA ITHARVLYYI RLSKTWFQLP DARLDDDWCL CYRPISFLNQ KPDLMAAIST 180
181 SEICVSFFNG GLTKIILNPK DASHYEQHID DSSYLFSLKK YLSLQAFKAD YRSPNTIISM 240
241 IFLSTYNVLV MLSLDYKLKV LDLSTNQCVE TIELSQTILP LQSFPYLTSD HTTNSFIALY 300
301 YPDNSHGSFS IYKLNANAHS FKLNVVIEKG IIPPSLPDDE FIPWMLSDFQ LISSEGSQSK 360
361 FLLIIAWKSN LNTVIQKCNL SLDQDESFSC VWSHSLDSFS LIEKTFFDVP TNMSSGDISE 420
421 IWLQHIFAHN TSIESIQVAL LSFQNSSSQV SKNKLDKFGA LTISELKNAV LSSIVSTIQI 480
481 EPNSDLTGYD YYEYKRLLYN EWERFAKLVA YLDHFGDEIL SINFDPSNAV TYINYANKVA 540
541 FIRDPYLIES FDEEPLTKLI SSLET
|
| Detection Method: |  |
| Confidence: | 2.02 |
| Match: | 1pguA |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.23598589443994 | bayes_pls_golite062009 |
| RNA binding | 1.36802414720047 | bayes_pls_golite062009 |
| protein binding | 1.35242477415251 | bayes_pls_golite062009 |
| transporter activity | 1.23232041140488 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.750051725890322 | bayes_pls_golite062009 |
| protein transporter activity | 0.487974053204324 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.271959658140432 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0245411309982146 | bayes_pls_golite062009 |
|
Region A: Residues: [566-720] |
1 11 21 31 41 51
| | | | | |
1 DDPSLIEGYQ ILDLGRSLHS CMSFSTLSEI RYSLRELVQD LPSYSLFDTL WVFYDKHIYP 60
61 NVDPDYISTL IDTLVSLENP MRDIDSLIQR LRSFDIYNHS AQSPSLFLCA SVARVLDSIL 120
121 KKFQVSIEGF IFLLSLITSQ QDYELQSKFA GCDKL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [721-880] |
1 11 21 31 41 51
| | | | | |
1 FLSLLEDWRL VSFLLENSAL LLEKFEEEDV DSTNCNLNTM EALASVNTAL QFFSALNYSE 60
61 CFSESQISPL HATVISSLSA IFIRDDTEND LVTELVEKLF LFKQYNACMQ LIGWLNSDPI 120
121 AVYLKALIYL KSKEAVKAVR CFKTTSLVLY SHTSQFAVLR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [881-1052] |
1 11 21 31 41 51
| | | | | |
1 EFQEIAEKYH HQNLLSCYYL HLSKKLFEES AYIDALEFSL LADASKETDD EDLSIAITHE 60
61 TLKTACAAGK FDAAHVALMV LSTTPLKKSC LLDFVNQLTK QGKINQLLNY SMPTLRQDVD 120
121 NLLERKAFQM INVESQPCWY NILFSWRYKH QNYRDAAAII YEKLSRYIST TE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1053-1136] |
1 11 21 31 41 51
| | | | | |
1 LIGKKERTFI IEHYLIVLNT LELLPKEDTW ILVTDMSVDK EPDPNFLPQK LLTLDAIVAE 60
61 YHLQLKDVAV QVTAEMSSAM NIDL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
