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Protein Overview: spt16

General Information:
Name(s) found: spt16 / SPBP8B7.19 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • FACT complex component Spt16 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1019 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    FACT complex [IDALink to PubMed article]
    nuclear chromatin [ISSLink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    Biological Process: DNA repair [TASLink to PubMed article]
    chromatin remodeling [ISSLink to PubMed article]
    DNA-dependent DNA replication [TASLink to PubMed article]
    histone exchange [ICLink to PubMed article]
    nucleosome assembly [ISSLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEYEIDEIT FHKRLGILLT SWKNEEDGKT LFQDCDSILV TVGAHDDTNP YQKSTALHTW  60
   61 LLGYEFPSTL ILLEKHRITI LTSVNKANML TKLAETKGAA ADVNILKRTK DAEENKKLFE 120
  121 KIIEYIRATN KKVGVFPKDK TQGKFINEWD SIFEPVKSEF NLVDASLGLA KCLAIKDEQE 180
  181 LANIKGASRV SVAVMSKYFV DELSTYIDQG KKITHSKFSD QMESLIDNEA FFQTKSLKLG 240
  241 DIDLDQLEWC YTPIIQSGGS YDLKPSAITD DRNLHGDVVL CSLGFRYKSY CSNVGRTYLF 300
  301 DPDSEQQKNY SFLVALQKKL FEYCRDGAVI GDIYTKILGL IRAKRPDLEP NFVRNLGAGI 360
  361 GIEFRESSLL VNAKNPRVLQ AGMTLNLSIG FGNLINPHPK NSQSKEYALL LIDTIQITRS 420
  421 DPIVFTDSPK AQGDISYFFG EDDSSLEDGV KPRKPPTRGT ATISSHKGKT RSETRDLDDS 480
  481 AEKRRVEHQK QLASRKQAEG LQRFAQGSVP SSGIEKPTVK RFESYKRDSQ LPQAIGELRI 540
  541 LVDYRAQSII LPIFGRPVPF HISTLKNASK NDEGNFVYLR LNFVSPGQIG GKKDELPFED 600
  601 PNAQFIRSFT FRSSNNSRMS QVFKDIQDMK KAATKRETER KEFADVIEQD KLIEIKNKRP 660
  661 AHINDVYVRP AIDGKRLPGF IEIHQNGIRY QSPLRSDSHI DLLFSNMKHL FFQPCEGELI 720
  721 VLIHVHLKAP IMVGKRKTQD VQFYREVSDI QFDETGNKKR KYMYGDEDEL EQEQEERRRR 780
  781 AQLDREFKSF AEKIAEASEG RIELDIPFRE LAFNGVPFRS NVLLQPTTDC LVQLTDTPFT 840
  841 VITLNEIEIA HLERVQFGLK NFDLVFIFQD FRRPPIHINT IPMEQLDNVK EWLDSCDICF 900
  901 YEGPLNLNWT TIMKTVNEDP IAFFEEGGWG FLGAPSDDEG DDSVEEVSEY EASDADPSDE 960
  961 EEEESEEYSE DASEEDGYSE SEVEDEESGE DWDELERKAR QEDAKHDAFE ERPSKKRHR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..440] PSI-BLAST 80.69897 AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU
    2 View Details [441..525] deduced N/A No confident structure predictions are available.
    3 View Details [526..644] Pfam 36.39794 No description for PF08644.2 was found. No confident structure predictions are available.
    4 View Details [645..923] FFAS03 0.965 No description for 2gcjA was found.
    5 View Details [924..1019] MSA 2.047996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.3228898238998 bayes_pls_golite062009
  • DNA binding
    		•  1.6830709273154 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67660713848062 bayes_pls_golite062009
  • binding
    		•  1.4562583231987 bayes_pls_golite062009
  • transcription factor activity
    		•  1.02226978078776 bayes_pls_golite062009
  • protein binding
    		•  0.170797254754318 bayes_pls_golite062009
  • catalytic activity
    		•  0.148551873544128 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle