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Protein Overview: SPBC56F2.08c

General Information:
Name(s) found: SPBC56F2.08c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 661 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [ISSLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYVSNLPVG TSSSAIHALF SAYGNVKDIW MLSPDNSAIV SYESLSSAIV ARDALHNRPV  60
   61 FENHGPVQVM LAKPSSNYEP GNITAAVSPP ASTSSKDGVV CSPTSTGASQ LLKSRVDILE 120
  121 VARQFEMRIN LDIVDSMIAS AIENNKVATE ILPPVETLRS RQFEASKLRE IRKNIDSGFY 180
  181 TQEEIEVIAR SMLDDVAELS SDYLGNTVVQ KFFEYCSDPI KEAMLERIAP YLAAIGIHKN 240
  241 GTWAAQKIID VASTEKQMDL IVKHLRPYTA LLYFDQFGNY VAQCCLRFKY PKNTFLFEVM 300
  301 ARHCCEIGQS RFGARAIRAC LENENATFEQ QALVVASIII NSHLLATNSN GMLLLTWLLD 360
  361 NSFFRNRHRL LAIHLATHLH TTCTHKLAST LIFKLINNKQ EPESRNLLLK NLFFSEKDNV 420
  421 LTYILQDQAV GPSFIHKVIT YPSIGREFLA QFHLVIKRVL INIHAQPNAV YCRLMEEVGM 480
  481 TSKSISPSLS GISAPSASVD SSASRLARDF GSLSLSSNSL LGSLGGLEST PAYPSYPSHI 540
  541 PLGTASLPLK GNLYQISRSD DIKSGAPVLD TSSLVNPTLA KSASLNNSSL LNPSSSLLRR 600
  601 EVPAGKLTMP AYPYTTQLMN HTAGADYGLP RLSSKLPQVF PGNYPRLQQS LFPRQGELRF 660
  661 N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 10.30103 No description for 2dgoA was found.
    2 View Details [115..478] PSI-BLAST 88.69897 Pumilio 1
    3 View Details [479..661] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  2.11573661150436 bayes_pls_golite062009
  • binding
    		•  1.83406697369076 bayes_pls_golite062009
  • protein binding
    		•  1.04044934052933 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.967597910409065 bayes_pls_golite062009
  • mRNA binding
    		•  0.73831124805124 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0579816100130538 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.022274123463527 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle