| Protein: | SPBC56F2.08c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 661 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC56F2.08c.
| Description | E-value | Query Range |
Subject Range |
|
|
355.0 | [0..10] | [489..593] |
|
|
353.0 | [0..81] | [577..516] |
|
|
352.0 | [0..62] | [490..620] |
|
|
349.0 | [0..31] | [490..499] |
|
|
349.0 | [0..94] | [496..455] |
|
|
345.0 | [0..94] | [495..516] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MLYVSNLPVG TSSSAIHALF SAYGNVKDIW MLSPDNSAIV SYESLSSAIV ARDALHNRPV 60
61 FENHGPVQVM LAKPSSNYEP GNITAAVSPP ASTSSKDGVV CSPTSTGASQ LLKS
|
| Detection Method: |  |
| Confidence: | 10.30103 |
| Match: | 2dgoA |
| Description: | No description for 2dgoA was found. |
|
Region A: Residues: [115-478] |
1 11 21 31 41 51
| | | | | |
1 RVDILEVARQ FEMRINLDIV DSMIASAIEN NKVATEILPP VETLRSRQFE ASKLREIRKN 60
61 IDSGFYTQEE IEVIARSMLD DVAELSSDYL GNTVVQKFFE YCSDPIKEAM LERIAPYLAA 120
121 IGIHKNGTWA AQKIIDVAST EKQMDLIVKH LRPYTALLYF DQFGNYVAQC CLRFKYPKNT 180
181 FLFEVMARHC CEIGQSRFGA RAIRACLENE NATFEQQALV VASIIINSHL LATNSNGMLL 240
241 LTWLLDNSFF RNRHRLLAIH LATHLHTTCT HKLASTLIFK LINNKQEPES RNLLLKNLFF 300
301 SEKDNVLTYI LQDQAVGPSF IHKVITYPSI GREFLAQFHL VIKRVLINIH AQPNAVYCRL 360
361 MEEV
|
| Detection Method: | |
| Confidence: | 88.69897 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.11573661150436 | bayes_pls_golite062009 |
| binding | 1.83406697369076 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| nucleic acid binding | 0.967597910409065 | bayes_pls_golite062009 |
| mRNA binding | 0.73831124805124 | bayes_pls_golite062009 |
| hydrolase activity | 0.0579816100130538 | bayes_pls_golite062009 |
| transcription regulator activity | 0.022274123463527 | bayes_pls_golite062009 |
|
Region A: Residues: [479-661] |
1 11 21 31 41 51
| | | | | |
1 GMTSKSISPS LSGISAPSAS VDSSASRLAR DFGSLSLSSN SLLGSLGGLE STPAYPSYPS 60
61 HIPLGTASLP LKGNLYQISR SDDIKSGAPV LDTSSLVNPT LAKSASLNNS SLLNPSSSLL 120
121 RREVPAGKLT MPAYPYTTQL MNHTAGADYG LPRLSSKLPQ VFPGNYPRLQ QSLFPRQGEL 180
181 RFN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
