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Protein Overview: SPBC16A3.17c

General Information:
Name(s) found: SPBC16A3.17c [Sanger Pombe]
Description(s) found:
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  • pir||T39535 MFS efflux transporter of unknown specificity - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626697|sp|O42922.1|YBIH_SCHPO RecName: Full=Uncharacterized MFS-type transporter C16A3.17c [NCBI NR]
  • gi|2842516|emb|CAA16868.1| membrane transporter [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113564|ref|NP_596772.1| membrane transporter [Schizosaccharomyces pombe] [NCBI NR]
  • membrane transporter [Sanger Pombe]
  • Uncharacterized MFS-type transporter C16A3.17c OS=Schizosaccharomyces pombe GN=SPBC16A3.17c PE=2 SV=1 [Swiss-Prot]
  • MFS TRANSPORTER OF UNKNOWN SPECIFICITY: O42922; [pompepVF.fasta]
  • MFS EFFLUX TRANSPORTER OF UNKNOWN SPECIFICITY: O42922; [pompepV13]
  • MFS efflux transporter of unknown specificity [pompep4896]
  • |||MFS transporter of unknown specificity [pompepnew.fasta]
  • SPBC16A3.17c protein [4896.FASTAC]
  • |||transporter|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • MFS efflux transporter of unknown specificity [Schizosaccharomyces pombe]gi|2842516|emb|CAA16868.1| SPBC16A3.17c [Schizosaccharomyces pombe]gi|7492192|pir||T39535 MFS efflux transporter of unknown specificity - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O42922) MFS efflux transporter of unknown specificity [pompep4896_normal_reversed]
  • |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC16A3.17c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC16A3.17c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Uncharacterized MFS-type transporter C16A3.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.17c PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 599 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [ISSLink to PubMed article]
    Biological Process: transmembrane transport [ISS]
    drug export [IC]
    tetracycline transport [IEA]
    response to antibiotic [IEA]
    Molecular Function: tetracycline:hydrogen antiporter activity [IEA]
    transmembrane transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSHNSF SGSKTNAAEG QNSIDGLSLK KTTSPFILTA YPSNEEKEVK ETDIVPDENK  60
   61 VNELDVHKQS TEFSKQESAS NDDDTNIQLI PENNMKIVVP ALILTLFLAA LDNTIVTTAL 120
  121 PTIAEDFNDT SSSSWIGSAY VLASNAVLPA VGVFCNILGR KIVLYICIFF FMLGSALCGA 180
  181 SQNMIWLIVC RAIQGLGGGG IISLVNIIIS DITPLRTRPM YSGILATAWG AALVAGPIIG 240
  241 GAICQRTTWR WIFFINLPSG GIATALIVVF LHLLPCERTS FKKFLKTFDF IGLVCVITGI 300
  301 VLILLGISLG ASSGKWRRAN ILCYLIIGGC LFVFAFIYDT FTKRNAVLPP PFFKNRSSAA 360
  361 LLACSSFFYL NYMLFAYYVP QYFQRIRGDN PIMSGVHTIP CAAVLCFFCT TVGMVLRKLG 420
  421 RYLPLIYVGY ISCVAGMGAM ICVNATTSMS KVMGLTTIFM FGSGFLFLPP LIAMQATFPP 480
  481 AMTSMATATL MFIRTMGGSI GITVGEVIFN ERVTQSFDGN TTYAQLSYKQ VERLPQELQI 540
  541 RVKNTYASAF RVIWIFCTVV MAIGFASIFF IKSRPLISNA QSVPAKKKGD SDEKPAEKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..599] PSI-BLAST 28.522879 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.54194478414824 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.21266150105753 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  2.15783210522667 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.79369588808394 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • binding
    		•  1.01584233411372 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle