YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16A3.17c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.98
Transmembrane Helix	97	120	0.83
Non-Cytoplasmic	121	135	0.84
Transmembrane Helix	136	155	0.94
Cytoplasmic	156	161	0.75
Transmembrane Helix	162	185	0.86
Non-Cytoplasmic	186	191	0.64
Transmembrane Helix	192	210	0.93
Cytoplasmic	211	220	0.77
Transmembrane Helix	221	244	0.89
Non-Cytoplasmic	245	251	0.84
Transmembrane Helix	252	274	0.93
Cytoplasmic	275	287	0.88
Transmembrane Helix	288	311	0.89
Non-Cytoplasmic	312	320	0.77
Transmembrane Helix	321	341	0.92
Cytoplasmic	342	357	0.89
Transmembrane Helix	358	379	0.89
Non-Cytoplasmic	380	395	0.87
Transmembrane Helix	396	416	0.94
Cytoplasmic	417	424	0.83
Transmembrane Helix	425	447	0.90
Non-Cytoplasmic	448	454	0.73
Transmembrane Helix	455	474	0.88
Cytoplasmic	475	489	0.65
Transmembrane Helix	490	509	0.72
Non-Cytoplasmic	510	549	0.75
Transmembrane Helix	550	571	0.93
Cytoplasmic	572	599	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSHNSF SGSKTNAAEG QNSIDGLSLK KTTSPFILTA YPSNEEKEVK ETDIVPDENK  60
   61 VNELDVHKQS TEFSKQESAS NDDDTNIQLI PENNMKIVVP ALILTLFLAA LDNTIVTTAL 120
  121 PTIAEDFNDT SSSSWIGSAY VLASNAVLPA VGVFCNILGR KIVLYICIFF FMLGSALCGA 180
  181 SQNMIWLIVC RAIQGLGGGG IISLVNIIIS DITPLRTRPM YSGILATAWG AALVAGPIIG 240
  241 GAICQRTTWR WIFFINLPSG GIATALIVVF LHLLPCERTS FKKFLKTFDF IGLVCVITGI 300
  301 VLILLGISLG ASSGKWRRAN ILCYLIIGGC LFVFAFIYDT FTKRNAVLPP PFFKNRSSAA 360
  361 LLACSSFFYL NYMLFAYYVP QYFQRIRGDN PIMSGVHTIP CAAVLCFFCT TVGMVLRKLG 420
  421 RYLPLIYVGY ISCVAGMGAM ICVNATTSMS KVMGLTTIFM FGSGFLFLPP LIAMQATFPP 480
  481 AMTSMATATL MFIRTMGGSI GITVGEVIFN ERVTQSFDGN TTYAQLSYKQ VERLPQELQI 540
  541 RVKNTYASAF RVIWIFCTVV MAIGFASIFF IKSRPLISNA QSVPAKKKGD SDEKPAEKV