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Protein Overview: ykt6

General Information:
Name(s) found: ykt6 / SPBC13G1.11 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • SNARE Ykt6 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 197 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    integral to membrane [IEA]
    cytosol [IDALink to PubMed article]
    Biological Process: vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [RCALink to PubMed article]
    Molecular Function: SNAP receptor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYSVSILR FDPKPVQLLC TASDLSSFSF FQRSSIGEFM NFFTKTVAER TNPGQRQDVE  60
   61 QSNYVFHVYN RSDGLCGVIA SDKEYPLRVA YTLLNKILDE FLTKNPRTKW ESGAVTLSFP 120
  121 ELDTYLSKYQ DPKQADTIMR VQQELDETKD VLHKTIESVL ARGEKLDDLI QRSDNLSTQS 180
  181 RMFYKSAKKQ NSCCIIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] PSI-BLAST 34.522879 Synaptobrevin homolog 1 ykt6
    2 View Details [131..197] PSI-BLAST 14.522879 Synaptobrevin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein-cysteine S-acyltransferase activity
    		•  5.70902768432932 bayes_pls_golite062009
  • protein-cysteine S-palmitoleyltransferase activity
    		•  5.70902768432932 bayes_pls_golite062009
  • S-acyltransferase activity
    		•  2.42277624456482 bayes_pls_golite062009
  • palmitoyltransferase activity
    		•  2.39665981402803 bayes_pls_golite062009
  • SNAP receptor activity
    		•  2.23518960752054 bayes_pls_golite062009
  • clathrin binding
    		•  2.03985651011974 bayes_pls_golite062009
  • binding
    		•  1.76450203501026 bayes_pls_golite062009
  • transporter activity
    		•  1.71943098913274 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.939682472116899 bayes_pls_golite062009
  • hydrolase activity
    		•  0.815544630085919 bayes_pls_golite062009
  • signal recognition particle binding
    		•  0.66489873553532 bayes_pls_golite062009
  • protein binding
    		•  0.590936503990514 bayes_pls_golite062009
  • protein transporter activity
    		•  0.17469233791907 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.131410992694836 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0936690070284361 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0846345824909659 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0820309452260982 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle