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Protein Overview: SPAC1399.05c

General Information:
Name(s) found: SPAC1399.05c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • transcription factor, zf-fungal binuclear cluster type [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEVERTRQS SSSLLTFKRK RALEACDSCR KQKTRCLAGS VEDENRACLR CRSLNMDCSL  60
   61 ADPNHFIRKV ENDNMDAISA NINSKLENRL KVLEKAISSI TNSPIAGQIS LKSEKDVFLQ 120
  121 GLLSMDEIEL LLEIFIERYG KRWLSVDYSA SQYMELLYTK SHLMLATACL IALRHNPSLK 180
  181 ARIYTDVLNI VDRLISEELL TTSPSLQFFE AVSMLTLYRP LRLSQKQDLW LLSGFALQHR 240
  241 TLSSTKGWFN GFAGSSATLT YLDIVPARTW NHLCHGHLVM CMGYRRHAML DENTFDDCRN 300
  301 ILTNTKANEF DGNILGMLSV YSMLYRMLRS PTLDLDYAIF QLEEWRKEWC HLWEQPEPQY 360
  361 SRIAYFYSYN VVYEASIQTA TDGNDFANIP RYVSMVQSYA LKTIDAIFEL SAYDMSRCSD 420
  421 HVLFHAGFAS ASLLRLIYAA KTKEVDTSIV QPKVLNDLVT KIWKWLLVIS VDQYHLATKF 480
  481 ANYLKEYQKT VNEGTAESTW FKGPLRPVSS TTLQALKPYN LGVATVERG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] PSI-BLAST 4.154902 No description for 2er8A was found.
    2 View Details [119..183] deduced N/A No confident structure predictions are available.
    3 View Details [184..529] FFAS03 1.02 CYCLIN H, A POSITIVE REGULATORY SUBUNIT OF CDK ACTIVATING KINASE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  2.75688185850223 bayes_pls_golite062009
  • binding
    		•  2.37916921859542 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.06743451505655 bayes_pls_golite062009
  • DNA binding
    		•  1.95321993038755 bayes_pls_golite062009
  • cyclin-dependent protein kinase regulator activity
    		•  1.41497909264171 bayes_pls_golite062009
  • protein binding
    		•  1.37207701115974 bayes_pls_golite062009
  • transcription factor activity
    		•  1.22628491144894 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  1.21941169140389 bayes_pls_golite062009
  • kinase regulator activity
    		•  1.18590233040331 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.962670695182671 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.797465164318676 bayes_pls_golite062009
  • transcription factor binding
    		•  0.655253705928308 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.461517963237846 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0606514459376675 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle