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Protein Overview: rim1

General Information:
Name(s) found: rim1 / SPAC2F3.04c [Sanger Pombe]
Description(s) found:
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  • gi|74675946|sp|O14087.2|RIM1_SCHPO RecName: Full=Single-stranded DNA-binding protein rim1, mitochondrial; AltName: Full=Mitochondrial ssDNA-binding protein; Flags: Precursor [NCBI NR]
  • gi|6912011|emb|CAB16271.2| mitochondrial single-stranded DNA binding protein Rim1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|62122685|dbj|BAD93308.1| mitochondrial single-stranded DNA binding protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115295|ref|NP_594383.1| mitochondrial single-stranded DNA binding protein Rim1 [Schizosaccharomyces pombe] [NCBI NR]
  • mitochondrial single-stranded DNA binding protein Rim1 [Sanger Pombe]
  • Single-stranded DNA-binding protein rim1, mitochondrial OS=Schizosaccharomyces pombe GN=rim1 PE=2 SV=2 [Swiss-Prot]
  • PUTATIVE SINGLE-STRANDED DNA-BINDING PROTEIN; PUTATIVE MITOCHONDRIAL DNA SYNTHESIS: O14087; [pompepVF.fasta]
  • PUTATIVE SINGLE-STRANDED DNA-BINDING PROTEIN; POSSIBLE MITOCHONDRIAL DNA SYNTHESIS: O14087; [pompepV13]
  • Putative single-stranded DNA-binding protein [pompep4896]
  • |||putative single-stranded DNA-binding protein [pompepnew.fasta]
  • SPAC2F3.04c protein [4896.FASTAC]
  • |||DNA binding (single-stranded) (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative single-stranded DNA-binding protein [Schizosaccharomyces pombe]gi|6912011|emb|CAB16271.2| SPAC2F3.04c [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • |rim1||single-stranded DNA binding protein|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O14087) Putative single-stranded DNA-binding protein [pompep4896_normal_reversed]
  • |rim1||mitochondrial single-stranded DNA binding protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • mitochondrial single-stranded DNA binding protein [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPAC2F3.04c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Single-stranded DNA-binding protein rim1, mitochondrial precursor (Mitochondrial ssDNA-binding protein) [nr-271106-contam.fasta]
  • hypothetical protein SPAC2F3.04c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Single-stranded DNA-binding protein rim1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rim1 PE=2 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 150 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial nucleoid [ISSLink to PubMed article]
    Biological Process: mitochondrial DNA replication [ISS]
    mitochondrial genome maintenance [ISSLink to PubMed article]
    Molecular Function: single-stranded DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLKSSRAF SKRLFSSSTV RYRDIQRLTL TGNLTKDVER LQSQKGNEYM RYTVASNNGK  60
   61 DVAPTFHSVY VFDSYNFDRL QTILRKGTRV YVEADAVWRS VPAGNEGSQA KMSLRHVSAD 120
  121 VLFYPRNKNG DESGEETHPE LDADPMINSF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] PSI-BLAST 38.0 ssDNA-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.69275272183315 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  2.3572495084765 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  2.34831682853439 bayes_pls_golite062009
  • binding
    		•  2.25744085310968 bayes_pls_golite062009
  • DNA binding
    		•  1.97161900822354 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.39029069959347 bayes_pls_golite062009
  • structural molecule activity
    		•  1.10843643894126 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.377540062296145 bayes_pls_golite062009
  • protein binding
    		•  0.360033745054291 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35415853560434 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • nuclease activity
    		•  0.192509675054684 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.157816897728538 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle