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Protein Overview: SPAC1565.07c

General Information:
Name(s) found: SPAC1565.07c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • TATA binding protein interacting protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1220 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    ubiquitin ligase complex [ISS]
    Biological Process: negative regulation of ubiquitin-protein ligase activity [ISS]
    regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    transcription initiation [ISS]
    protein ubiquitination [ISS]
    Molecular Function: TATA-binding protein binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGILLKKY VESSDKDIRY MALSDLAARL NDANHLKNLK LESFPDTLDV LLQALSDASP  60
   61 EVQQEAVRCV AIISSKIPQD KLKSTVENLL SGVAGKKSKN YLSALSLLLS NSNVQPFVNK 120
  121 FYTSTVFPSF LQILKQYNVA QEEFFAILCV VCDSLEIYHS NLSTLLPNNF ELCIDVFQKC 180
  181 TTQCQRELII KKACYLLSDV SLYGPRFAYK YIIEVLDRGL GPSTQMSEVN ISIKLLNEIL 240
  241 LSSKKEKDSS TSFISTAVAD YTNKILSLLK KEEAPDELTQ KLLEVLGLLL EYQQVNILKI 300
  301 WPELHGLLIS KISYDPNLIS DTNDEDDIAD FLEEMSDYSS IYEDEEDVSW IVRRESLKVV 360
  361 LSVILSRLEY LPIVLQALGT SVVSKLNDRE ESVCLISIEV LKQAFLHVPR WIEVYATSND 420
  421 RKRRYEGLPS DRSAISDTSI YLVSVIGKHV SKLSDKTPLS IVSELLNLVT VIFSSRDLGV 480
  481 QSEFSNLSSI IYRFPDFSTL DIKIKLNLVR LISAIISCGC EEIENMESKM STILSLAVQN 540
  541 NYPQLSYEAL ITELSFCKYI HKKQPTNVST DFSTMIDSSL QLLESKISDL KVRLALIDLV 600
  601 SQYVILFYEP DFDSIFLRRV LIILCKKLQE EPTRSAAARA LCDIFMSVTD ITKIENGTKI 660
  661 YEEILQDCCR HIDKSGNEFT TAYLELLEVL LKVGQKYLAE SLLEHILGLL IETLKRNTEN 720
  721 TVAILKCLLI IPLSILLKSK NLLIDTIISH LQSSTIHLNE ESVCLLSRII AVISKEEDLE 780
  781 LIINSFTCAQ KPVEEMVTLA LIAAQLICIF QSKAIVTSLN KSFMSPKSEV RIKVFTTLIF 840
  841 GQLDYGKLTL PANEYFDTIA SNLNSPNADV MKAAAIALGS LTSQSEKFIK ELCALYVSDA 900
  901 YDKELLLISF LTFLKKSKID YETADKIWDI LSKDIENIKD FSTSPFRTLL SECLGLLICN 960
  961 ESSSLYYKLE LLSSSEASNH MLLSLSVFRF SLTLDCPKLK AYEKQFFEKA YKLFQNPDLE1020
 1021 VSQETLQVII SVIKNRRSCI ADVYNELLQG LISKSSVDSS NVHVVQMGPF QHVVDNSINQ1080
 1081 RQLVFETLYS LLDIPESLNH LTHFLQVSVM GLEDEHYIKL VSLSILEKLV DCSPSIIDEQ1140
 1141 VDTILEALRK IIELRKTEKT LKTDSDNILD LVRSALRVLF TMKLKCDNPV ISEFESQVQK1200
 1201 GPYSLEYEGI KNEIKTTIKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1220] PSI-BLAST 1000.0 Crystal Structure of The Cand1-Cul1-Roc1 Complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.0667965351474 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.74745843355294 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.16673352512615 bayes_pls_golite062009
  • DNA binding
    		•  1.95242774903625 bayes_pls_golite062009
  • protein binding
    		•  1.73688475473996 bayes_pls_golite062009
  • transcription factor activity
    		•  1.20660383756339 bayes_pls_golite062009
  • RNA binding
    		•  0.40024158562931 bayes_pls_golite062009
  • protein kinase activity
    		•  0.304524178731686 bayes_pls_golite062009
  • transcription activator activity
    		•  0.160275383613705 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0761841407615293 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0221966060394205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle