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Protein Overview: SPAC589.07c

General Information:
Name(s) found: SPAC589.07c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • WD repeat protein Atg18 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 373 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    fungal-type vacuole membrane [ISSLink to PubMed article]
    cytosol [ISSLink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: autophagy [IGILink to PubMed article]
    protein targeting to vacuole [ISSLink to PubMed article]
    macroautophagy [IC]
    cellular response to nitrogen starvation [IGILink to PubMed article]
    Molecular Function: phosphoinositide binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFFVRKYRG KAALLSIGTF DGYKIYNCDP FGKCFHKIQG ATSIVEMLFS TSLVALVEKD  60
   61 DGNNRKLKLI NTKKSTTICE LTFPTPLLAV KLNRKRLLAV LEEQIYVYDI SNMLLLHTIE 120
  121 TTSNVFAVCA LSPNSENCYL AYPDSRDHEP RTEGESSSPN VSNSAVSGQV ILWDVINCKQ 180
  181 ITKIEAHKDS LACLAFNSDG TMLATASDNG RIIRVFAIPS GQRLYQFRRG SLPAQIYSIA 240
  241 FHPDSSLLTV TSSTQTVHIF RLKEVYSNLE RQGLLPSSPP PKESLLRRSS RSLIGTVGGY 300
  301 LPQSVSGMLD PERDFAYAHI PGDKVTSIAA FGPDNTIVNV ATYDGNLYSF RVNLRTGGEC 360
  361 AMVNHFCVGL TAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..373] PSI-BLAST 52.154902 No description for 2gnqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle