YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC589.07c
Organism:	Schizosaccharomyces pombe
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC589.07c.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	349.0	[0..3]	[372..1301]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	336.0	[0..3]	[372..1215]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	333.0	[0..3]	[372..740]
gi\|17225206 - gi\|17225206\|gb\|AAL37299.1\|AF323583_1 beta transducin-like protein HET-E2C*4 [Podospora anserina]	331.0	[0..3]	[372..844]
gi\|48893630, gi\|... - gi\|71673807\|ref\|ZP_00671555.1\| TPR repeat:G-protein beta WD-40 repeat:YD repeat [Trichodesmium eryth...	328.0	[0..3]	[370..957]

Back

Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFFVRKYRG KAALLSIGTF DGYKIYNCDP FGKCFHKIQG ATSIVEMLFS TSLVALVEKD  60
   61 DGNNRKLKLI NTKKSTTICE LTFPTPLLAV KLNRKRLLAV LEEQIYVYDI SNMLLLHTIE 120
  121 TTSNVFAVCA LSPNSENCYL AYPDSRDHEP RTEGESSSPN VSNSAVSGQV ILWDVINCKQ 180
  181 ITKIEAHKDS LACLAFNSDG TMLATASDNG RIIRVFAIPS GQRLYQFRRG SLPAQIYSIA 240
  241 FHPDSSLLTV TSSTQTVHIF RLKEVYSNLE RQGLLPSSPP PKESLLRRSS RSLIGTVGGY 300
  301 LPQSVSGMLD PERDFAYAHI PGDKVTSIAA FGPDNTIVNV ATYDGNLYSF RVNLRTGGEC 360
  361 AMVNHFCVGL TAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.154902
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits