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Protein Overview: pex13

General Information:
Name(s) found: pex13 / SPAC3C7.10 [Sanger Pombe]
Description(s) found:
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  • pir||T38696 probable peroxisomal membrane protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626634|sp|O14136.1|PEX13_SCHPO RecName: Full=Peroxisomal membrane protein pex13; AltName: Full=Peroxin-13 [NCBI NR]
  • gi|2462685|emb|CAB16740.1| peroxin-13 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114523|ref|NP_593611.1| peroxin-13 [Schizosaccharomyces pombe] [NCBI NR]
  • peroxin-13 [Sanger Pombe]
  • Peroxisomal membrane protein pex13 OS=Schizosaccharomyces pombe GN=pex13 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE PEROXISOMAL MEMBRANE PROTEIN; WITH SRC HOMOLOGY DOMAIN: O14136; [pompepVF.fasta]
  • Putative peroxisomal membrane protein, with SRC homology domain [pompep4896]
  • |||putative peroxisomal membrane protein [pompepnew.fasta]
  • SPAC3C7.10 protein [4896.FASTAC]
  • |||src (SH3) homology domain|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative peroxisomal membrane protein; with SRC homology domain [Schizosaccharomyces pombe]gi|2462685|emb|CAB16740.1| SPAC3C7.10 [Schizosaccharomyces pombe]gi|7492796|pir||T38696 probable peroxisomal membrane protein - fission yeast (Schizosaccharomyce [nrdb_11152004_Chlamydomonas]
  • |||src |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O14136) Putative peroxisomal membrane protein, with SRC homology domain [pompep4896_normal_reversed]
  • |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC3C7.10 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC3C7.10 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |pex13||peroxin 13 |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Peroxisomal membrane protein pex13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex13 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 288 amino acids

    Gene Ontology:
    Cellular Component: peroxisomal membrane [ISSLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    integral to membrane [IEA]
    Biological Process: protein import into peroxisome matrix [ISSLink to PubMed article]
    protein targeting to peroxisome [ISSLink to PubMed article]
    protein import into peroxisome matrix, docking [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNQNEKGP SLPSYPAGGI MSVSNSNADT NQGVTQHPLA NRIVNPNYYN MGFNPYSGFN  60
   61 SFIPSFNPFV PLETNLPGNG PISSLQVIES IVGAVGSIAQ VLESTLMAAH MSYNTFVSVS 120
  121 ENLNKLKSSI GAIFGIVSLL SRLKRLVLKF FKHSKIDEMN SQEYDVFEKE EGNHKNSIYS 180
  181 IVSSLAIILG LVGLPYAIIR LFKNIYEKEK QIQQAKIRKK IDSLEFCKAD YEFMSRDPGV 240
  241 EMSLKKGDII AILSKTDTQG NPCEWWQGRK RSGETGWFPS NYCSIISR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] deduced N/A No confident structure predictions are available.
    2 View Details [103..193] PSI-BLAST 13.0 Crystal structure of endophilin-A1 BAR domain
    3 View Details [194..288] PSI-BLAST 21.0 Peroxisomal membrane protein Pex13p

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.49184519104882 bayes_pls_golite062009
  • protein binding
    		•  2.29371158534719 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.67112127425228 bayes_pls_golite062009
  • transporter activity
    		•  1.30447542854757 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.08558010881058 bayes_pls_golite062009
  • actin binding
    		•  0.75525840382431 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.566172161499832 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.325817349097199 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.00508584255499911 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle