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Protein Overview: atg20

General Information:
Name(s) found: atg20 / SPCC16A11.08 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • sorting nexin Atg20 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 534 amino acids

    Gene Ontology:
    Cellular Component: endosome [ISS]
    cytoplasm [IDALink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: autophagy [ISSLink to PubMed article]
    cellular response to stress [IEPLink to PubMed article]
    early endosome to Golgi transport [ISS]
    retrograde transport, endosome to Golgi [ISSLink to PubMed article]
    CVT pathway [ISS]
    Molecular Function: phosphatidylinositol-3-phosphate binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQDDSYEEK PEVISSDSGG SGYSTEIQIV GTVTSSDGSY VEYEIVHQKR SVWRRYSDFE  60
   61 SLVKLMRRQY PAAIVPPIPG KQSLLSYAKH PRKAKSDAEF LNFRSRMLEL FLRQCLLHPC 120
  121 IRSNPIFDKF IHSTVSWHVT LSSLDLPKDS NTDPLRLPPI ATEHDPFAHL RSSMPLVMAN 180
  181 SLSPPSSRAL KPIHSLSNPS TASSLEPSSP LGSEDECHPP TSDMQPTHEL NESPSTPTAP 240
  241 DFPHYNSSPS ELSPTQRRSS ISNGKDAPSP VLKDLTSYTQ EVIVCRKFLH HSLSPSIHST 300
  301 LSSISKMESC LSKLGSAFHS LTALNEIQLA NHLQVIANAF EFSGMYAKEF EQEFNSSVYE 360
  361 KMVQSMQLAK CAADALKYKQ LKIQQRDFLQ DQLIHSNTMS ATDSMVAASP TIHPATRLNT 420
  421 IQRAVVSQAK KGYTIFGRLQ NVLHDFVEGE TSISKESLQQ HKNTIENQLA AANWDCQKID 480
  481 EFMDAELKFY KECQTSQWEE IIKSVHECIY KWAQTNLQRW LRTREELENL SKDI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..289] PSI-BLAST 27.30103 No description for 2dybA was found.
    2 View Details [290..534] FFAS03 2.21 No description for 2ficA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle