YRC Public Data Repository - Protein Structure Prediction

Protein:	atg20
Organism:	Schizosaccharomyces pombe
Length:	534 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atg20.

Description	E-value	Query Range	Subject Range
ATG20_ASHGO - Autophagy-related protein 20 OS=Ashbya gossypii GN=ATG20 PE=3 SV=1 ATG20_ASHGO - Autophagy-related protein 20 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y...	273.0	[0..24]	[529..99]
gi\|83768603 - gi\|83768603\|dbj\|BAE58740.1\| unnamed protein product [Aspergillus oryzae] gi\|169772547 - gi\|169772547\|ref\|XP_001820742.1\| hypothetical protein [Aspergillus oryzae RIB40]	214.0	[0..18]	[530..94]
gi\|42554154, gi\|... - gi\|46125145\|ref\|XP_387126.1\| hypothetical protein FG06950.1 [Gibberella zeae PH-1], gi\|42554154\|gb\|E...	210.0	[0..1]	[532..67]
SNX41_EMENI - Sorting nexin-41 OS=Emericella nidulans GN=snx41 PE=3 SV=1 SNX41_EMENI - Sorting nexin-41 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)...	208.0	[0..18]	[530..90]
gi\|114196463, gi... - gi\|115384448\|ref\|XP_001208771.1\| sorting nexin-41 [Aspergillus terreus NIH2624], gi\|114196463\|gb\|EAU...	202.0	[0..18]	[405..94]
SNX4_ASPFU - Sorting nexin-4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=... SNX4_ASPFU - Sorting nexin-4 OS=Aspergillus fumigatus GN=snx4 PE=3 SV=1	198.0	[0..19]	[398..69]
gi\|85109327 - gi\|85109327\|ref\|XP_962863.1\| hypothetical protein [Neurospora crassa OR74A] SNX41_NEUCR - Sorting nexin-41 - Neurospora crassa	194.0	[0..18]	[532..105]
gi\|240107341 - gi\|240107341\|gb\|EER25526.1\| PX domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi\|90304829, gi\|... - gi\|90304829\|gb\|EAS34460.1\| hypothetical protein CIMG_05484 [Coccidioides immitis RS], gi\|119190873\|r...	191.0	[0..18]	[405..95]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQDDSYEEK PEVISSDSGG SGYSTEIQIV GTVTSSDGSY VEYEIVHQKR SVWRRYSDFE  60
   61 SLVKLMRRQY PAAIVPPIPG KQSLLSYAKH PRKAKSDAEF LNFRSRMLEL FLRQCLLHPC 120
  121 IRSNPIFDKF IHSTVSWHVT LSSLDLPKDS NTDPLRLPPI ATEHDPFAHL RSSMPLVMAN 180
  181 SLSPPSSRAL KPIHSLSNPS TASSLEPSSP LGSEDECHPP TSDMQPTHEL NESPSTPTAP 240
  241 DFPHYNSSPS ELSPTQRRSS ISNGKDAPSP VLKDLTSYTQ EVIVCRKFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	2dybA
Description:	No description for 2dybA was found.

Predicted Domain #2

Region A:
Residues: [290-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHSLSPSIHS TLSSISKMES CLSKLGSAFH SLTALNEIQL ANHLQVIANA FEFSGMYAKE  60
   61 FEQEFNSSVY EKMVQSMQLA KCAADALKYK QLKIQQRDFL QDQLIHSNTM SATDSMVAAS 120
  121 PTIHPATRLN TIQRAVVSQA KKGYTIFGRL QNVLHDFVEG ETSISKESLQ QHKNTIENQL 180
  181 AAANWDCQKI DEFMDAELKF YKECQTSQWE EIIKSVHECI YKWAQTNLQR WLRTREELEN 240
  241 LSKDI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.21
Match:	2ficA
Description:	No description for 2ficA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits