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Protein Overview: atg13

General Information:
Name(s) found: atg13 / SPAC4F10.07c [Sanger Pombe]
Description(s) found:
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  • pir||T38811 hypothetical protein SPAC4F10.07c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|48474255|sp|O36019.1|ATG13_SCHPO RecName: Full=Autophagy protein 13; AltName: Full=Meiotically up-regulated gene 78 protein [NCBI NR]
  • gi|2388978|emb|CAB11710.1| autophagy associated protein Atg13 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115662|ref|NP_594750.1| autophagy associated protein Atg13 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • autophagy associated protein Atg13 [Sanger Pombe]
  • (O36019) Protein C4F10.07c in chromosome I [Swiss-Prot]
  • Autophagy protein 13 OS=Schizosaccharomyces pombe GN=atg13 PE=1 SV=1 [Swiss-Prot]
  • APPEARS TO LOCALIZE TO THE NUCLEOLAR REGION; POSSIBLY INVOLVED IN AUTOPHAGY; SIMILAR TO S. CEREVISIAE APG13: O36019;Q9USA3; [pompepVF.fasta]
  • APPEARS TO LOCALIZE TO THE NUCLEOLAR REGION; POSSIBLE INVOLVEMENT IN AUTOPHAGY BY SIMILARITY TO YEAST APG13: O36019;Q9USA3; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||localization of GFP fusion-nucleolar region [pompepnew.fasta]
  • Protein C4F10.07c in chromosome I [4896.FASTAC]
  • |||localization nucleolus (GFP)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2388978|emb|CAB11710.1| SPAC4F10.07c [Schizosaccharomyces pombe]gi|48474255|sp|O36019|YEK7_SCHPO Protein C4F10.07c in chromosome Igi|7491135|pir||T38811 hypothetical protein SPAC4F10.07c - fission yeas [nrdb_11152004_Chlamydomonas]
  • |||localization nucleolus |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O36019) Hypothetical protein [pompep4896_normal_reversed]
  • |atg13|apg13, mug78|autophagy associated protein Atg13 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC4F10.07c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC4F10.07c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |atg13|apg13, mug78|autophagy associated protein kinase regulatory subunit Atg13|Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Autophagy protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atg13 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 758 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IEA]
    Biological Process: ascospore formation [IMPLink to PubMed article]
    autophagy [IMPLink to PubMed articleLink to PubMed article]
    conjugation with cellular fusion [IMPLink to PubMed article]
    protein targeting to vacuole [ISSLink to PubMed article]
    macroautophagy [IC]
    cellular response to nitrogen starvation [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLNTQLPR MYSAPPGHSK AVSTELNKDL SSVGGRSAKL GQVIHHCFYK TGLIILESRL  60
   61 NVFGTSRPRE SSKNNKWFNL EIVETELYAE QFKIWKNIEL SPSRKIPPMV LHTYLDISDL 120
  121 SKNQTLSVSD GTHSHAINFN NMSTMKIVLE RWIVNLDGEA LSTPLELAVL YKKLVVLFRS 180
  181 LYTYTHLMPL WKLKSKIHKL RAHGTSLKVG CALSTDDVLS NDFLPISAPI SSSLGSSIAT 240
  241 FSFSPVGTPA GDFRISVQYR KNCHFEVHDS DALLSNQLLS ADKHQLAASN NSQDFEDGKQ 300
  301 YDQPPPSFAT RLAKQSDPNS LLQSEIQHLA SIESITAQAA PLVTIHPFKS PSLSASPGSN 360
  361 FDNMSISPKV AVNRYIHRGP SATSLNKFSM ISDAASKSRA KLPPLTSGSL KLNTLDISNT 420
  421 PNLRRFSSSF GPRERKESFS SRNRLPLVNH PIRSIFKHNV SENPITDHSE HAVYDSEFAS 480
  481 KDDLSGFIQL LDSHAHHLNA SEGSKSSGSF PGKVQTLTSG ISPVAHPHNS LGSSNEIFDI 540
  541 DTYNHSIDNS GSRFTEAVKH NLGNSSHSIM RHHTLGTLRS RPSFSEKSTF PAPLTSISQA 600
  601 STFQGDNRSP STVIPHTQTE VPSANDTSKQ LASLHDMRKS QSPICARSAT SAGLPRFEYH 660
  661 TSLSKSLEHS STPASLQATK TPSPSFVLEP GIPQEYKKHF DNLSEERRQC LTPSTPTYEY 720
  721 YNEHNPNYDD DLLFTMTDMT LEPHDVSAIR LGSPKSDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..294] deduced N/A No confident structure predictions are available.
    2 View Details [295..384] deduced N/A No confident structure predictions are available.
    3 View Details [385..497] MSA 3.17599 View MSA. No confident structure predictions are available.
    4 View Details [498..669] MSA 3.177994 View MSA. No confident structure predictions are available.
    5 View Details [670..758] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle