YRC Public Data Repository - Protein Structure Prediction

Protein:	atg13
Organism:	Schizosaccharomyces pombe
Length:	758 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atg13.

Description	E-value	Query Range	Subject Range
gi\|46128227, gi\|... - gi\|46128227\|ref\|XP_388667.1\| hypothetical protein FG08491.1 [Gibberella zeae PH-1], gi\|42548465\|gb\|E...	243.0	[0..9]	[725..38]
gi\|68420948 - gi\|68420948\|ref\|XP_700519.1\| PREDICTED: similar to Protein KIAA0652 [Danio rerio]	237.0	[0..26]	[454..1]
gi\|109106554 - gi\|109106554\|ref\|XP_001111885.1\| PREDICTED: hypothetical protein LOC9776 isoform 8 [Macaca mulatta]	236.0	[0..26]	[453..1]
gi\|55726419 - gi\|55726419\|emb\|CAH89979.1\| hypothetical protein [Pongo abelii] ATG13_PONAB - Autophagy-related protein 13 OS=Pongo abelii GN=ATG13 PE=2 SV=1	234.0	[0..26]	[453..1]
gi\|40788316 - gi\|40788316\|dbj\|BAA31627.2\| KIAA0652 protein [Homo sapiens]	234.0	[0..25]	[453..1]
ATG13 - Regulatory subunit of the Atg1p signaling complex; stimulates Atg1p kinase activity; required for ve... ATG13_YEAST - Autophagy-related protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG13 PE=1 ...	233.0	[0..42]	[610..13]
gi\|114637326, gi... - gi\|114637326\|ref\|XP_001164843.1\| PREDICTED: similar to Protein KIAA0652 isoform 21 [Pan troglodytes]...	233.0	[0..26]	[453..1]
gi\|109468421, gi... - gi\|109470253\|ref\|XP_001069036.1\| PREDICTED: similar to Protein KIAA0652 [Rattus norvegicus], gi\|1094...	231.0	[0..26]	[453..1]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLNTQLPR MYSAPPGHSK AVSTELNKDL SSVGGRSAKL GQVIHHCFYK TGLIILESRL  60
   61 NVFGTSRPRE SSKNNKWFNL EIVETELYAE QFKIWKNIEL SPSRKIPPMV LHTYLDISDL 120
  121 SKNQTLSVSD GTHSHAINFN NMSTMKIVLE RWIVNLDGEA LSTPLELAVL YKKLVVLFRS 180
  181 LYTYTHLMPL WKLKSKIHKL RAHGTSLKVG CALSTDDVLS NDFLPISAPI SSSLGSSIAT 240
  241 FSFSPVGTPA GDFRISVQYR KNCHFEVHDS DALLSNQLLS ADKHQLAASN NSQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [295-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEDGKQYDQP PPSFATRLAK QSDPNSLLQS EIQHLASIES ITAQAAPLVT IHPFKSPSLS  60
   61 ASPGSNFDNM SISPKVAVNR YIHRGPSATS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [385-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNKFSMISDA ASKSRAKLPP LTSGSLKLNT LDISNTPNLR RFSSSFGPRE RKESFSSRNR  60
   61 LPLVNHPIRS IFKHNVSENP ITDHSEHAVY DSEFASKDDL SGFIQLLDSH AHH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [498-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNASEGSKSS GSFPGKVQTL TSGISPVAHP HNSLGSSNEI FDIDTYNHSI DNSGSRFTEA  60
   61 VKHNLGNSSH SIMRHHTLGT LRSRPSFSEK STFPAPLTSI SQASTFQGDN RSPSTVIPHT 120
  121 QTEVPSANDT SKQLASLHDM RKSQSPICAR SATSAGLPRF EYHTSLSKSL EH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [670-758]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTPASLQAT KTPSPSFVLE PGIPQEYKKH FDNLSEERRQ CLTPSTPTYE YYNEHNPNYD  60
   61 DDLLFTMTDM TLEPHDVSAI RLGSPKSDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits