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Protein Overview: usp101

General Information:
Name(s) found: usp101 / SPAC19A8.13 [Sanger Pombe]
Description(s) found:
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  • pir||T37948 probable U1 small nuclear ribonucleoprotein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74675931|sp|O13829.1|RU17_SCHPO RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa homolog; Short=U1 snRNP 70 kDa homolog; Short=U1-70K; Short=U1 70K; AltName: Full=U1 small nuclear ribonucleoprotein usp101; Short=U1 snRNP protein usp101 [NCBI NR]
  • gi|2388912|emb|CAB11649.1| U1 snRNP-associated protein Usp101 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114691|ref|NP_593779.1| U1 snRNP-associated protein Usp101 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • U1 snRNP-associated protein Usp101 [Sanger Pombe]
  • U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE U1 SMALL NUCLEAR RIBONUCLEOPROTEIN; PUTATIVE PRE-MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SNP1: O13829; [pompepVF.fasta]
  • PUTATIVE U1 SMALL NUCLEAR RIBONUCLEOPROTEIN; PUTATIVE PRE-MRNA SPLICING FACTOR; SIMIALR TO S. CEREVISIAE SNP1: O13829; [pompepV13]
  • Putative U1 small nuclear ribonucleoprotein [pompep4896]
  • |||putative U1 small nuclear ribonucleoprotein [pompepnew.fasta]
  • SPAC19A8.13 protein [4896.FASTAC]
  • |||U1 snRNP associated (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative U1 small nuclear ribonucleoprotein [Schizosaccharomyces pombe]gi|2388912|emb|CAB11649.1| SPAC19A8.13 [Schizosaccharomyces pombe]gi|7493123|pir||T37948 probable U1 small nuclear ribonucleoprotein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||U1 snRNP associated |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O13829) Putative U1 small nuclear ribonucleoprotein [pompep4896_normal_reversed]
  • |usp101|snp1|U1 snRNP-associated protein Usp101 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC19A8.13 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC19A8.13 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp101 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: commitment complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: nuclear mRNA 5'-splice site recognition [ISS]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: U1 snRNA binding [ISSLink to PubMed article]
    mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKLPAPLL ALFAPRPPLR YLPPMDVPPE KRSTPRVSGI AKYLKYAQSH DQQYHPTESL  60
   61 EEKRLRLRDE KQKQQRERLR SMIKVWDPDH DRHVIGDPYK TMFLSRLSYD TKESDIEREF 120
  121 TRYGPIERIR VVRNKVTGKS MGYAFVVFER ERDLKVAYKA SAGLMLNGRR IVVDVERGRT 180
  181 VKGWLPRKLG GGLGGRHYTK ERPRRERGSR FRGDSGFRGG YRGGFRKSSG GGSRFGRGPT 240
  241 RSSHSSDYGG RDSSPKRRRY N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] PSI-BLAST 28.69897 Hu antigen D (Hud)
    2 View Details [181..261] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • U1 snRNA binding
    		•  4.22094068431436 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • protein binding
    		•  0.42571879933058 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle